Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN48130

FASTA Sequence
Unigene ID: UN48130Length: 911 SSR 
GTTTCTCTCAAGCGATAGACTCTGAACATCTCTCAAAGTTTTCCGATCTCTCAACCCGAAGAAAGAAAGACACAACACGTAAAAGA
TTCAGTCTGATTATGGCTCTCGAAGCGATGAATTGTCCGACGAACATGTCTTCGTTCACAGCACGGAAAGACAGAATCGAACCAAC
AGACGATCTGATGACGAACGACGCCGTTTTCTTGGAGCCTTGGCTGAAACGCAAACGCTCGAAACGCCAGCGTTCTCGCAGCCCTT
CTTCCCCGTCCTCCTCCTCCTCCTCGCCGCCTCCTCGTTCTCGCCCCAAATCCCAGATTCAGGATCTTGCGGAGGAAGAGTATCTC
GCTCTCTGTCTCCTCATGCTCGCCAACGACCACCACCAACCCACCAAGACGACGCGGCGGCCGCCGCCGCAAGAATCCACCACGAA
GCTTTCGCACGAGTGCAGCGTTTGCGGGAAAGCGTTTCCTTCTTACCAGGCTTTAGGCGGACACAAAGCCAGCCACCGAATCAAGC
CTCCAACAACCGCCGCCGCCGATGATAACTCGACATCTCCGACCATCCCCGTCTCCGTCGCGGGAGAAAAGCATCCGACTTCCACC
ACCATCGCACCTTCCGGGAAGATCCACGAGTGTTCCATCTGCCATAGAGTGTTCCCGACGGGTCAAGCTCTCGGCGGCCACAAACG
CTGTCACTACGAAGGAACCATCGGCGGCGGGGGAACCAAATCGGTTAGCCAGAGTGGAAGCGTGACGAGTACGGTTTCGGAAGAAC
GAAACAACCGCGTGCAGTTCATCGATCTAAACCTCCCTGCGTTACCGGAGCTCAGCCTTAGCCACCACAACACAGTCGTCGACGAA
GAGATTCAAAGTCCTTTGACCGGTAAAAAACCGCTTTTGTCGTTGACCGAT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
ABI74621 C2H2 zinc finger protein 1 [Eutrema halophilum]9277e-098
XP_002885316 hypothetical protein ARALYDRAFT_479472 [Arabidopsis lyrata subsp. lyrata]8694e-091
NP_188592 zinc-finger protein 2 [Arabidopsis thaliana]8604e-090
CAF74935 zinc finger DNA-binding protein [Catharanthus roseus]4482e-042
XP_002320035 predicted protein [Populus trichocarpa]4241e-039

Swiss-Prot top hits (Blast detail)Scoree value
Q42430 Zinc finger protein 13484e-032

TrEMBL top hits (Blast detail)Scoree value
A7J387 C2H2 zinc finger protein 19275e-098
Q9SSW2 Cys2/His2-type zinc finger protein 28603e-090
Q5TJD4 Zinc finger DNA-binding protein4482e-042
B9IBS5 Predicted protein4241e-039
B7FI30 Putative uncharacterized protein4185e-039

Arabidopsis top hits (Blast detail)Scoree value
AT3G19580.1 AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2); DNA binding / nucleic acid binding / transcription factor/ transcription repressor/ zinc ion binding8602e-092
AT3G19580.2 AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2); DNA binding / nucleic acid binding / transcription factor/ transcription repressor/ zinc ion binding8602e-092
AT1G27730.1 STZ (salt tolerance zinc finger); nucleic acid binding / transcription factor/ transcription repressor/ zinc ion binding4102e-040
AT5G04340.1 ZAT6 (ZINC FINGER OF ARABIDOPSIS THALIANA 6); nucleic acid binding / transcription factor/ zinc ion binding3824e-037
AT1G49900.1 zinc finger (C2H2 type) family protein3153e-029

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
192  40%
 
181  20%
 
202  40%

Unigene MembersMember information