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Information for unigene UN48203

FASTA Sequence
Unigene ID: UN48203Length: 933 SSR 
ATGTAATTTTGTACCTTTACAGGTTACATGCCTCCTCCAGGAGTACCACAGATGATGGCACCACCTGGTGGTCCTCTACCACCACC
ACCTCCACAAAATGGTATTCTTAGGCCACCAGGATTGGCTCCAATACCAGGTCAAGGTGGTGCGCCACCTCCCAATTACACTGGAC
TTCCTCCTCCTCCTCCTTATCATACAAATCCAACTGCTGCTCCACCAAGTGTTGGCTTCAACAATCCGAACCCTGGTGCTGAATCC
CCTTTTCTAATCTAATCCGTGTGGAGAGGTCGAGATGTAGTGTACGTTAATTGCATAATTTTATGTACTATTCTTATTTCCATAGA
ATGATGAAAGATCTATTATAACAAACAGTCAGATTCATGAAAGATTTTGATAAAATGGCTTTCATTCACTGCTTGCACCAACGAGT
AGATCCGTATGTGTTGCTGCAAACTTTGTGTTTCCTTTTGCAAGCAATTTAGAAGAGACAATGCCTGTCATATTCCAGTTTCTGAA
TCACGATTCCATTCAGCAAAAGCTCTGCGGTGTAGATTTCAGCTCCTTGATCAATGAAAGGAAGACATAAATCTCTATCGTCTTCG
CAAGAAATAATCAATAGATCATCTGGAATTTTTCTATTCGCTGCAGCAATTATTTCACTTATCTCCACTACCTGCCCTTGAGTCAA
CTTCACTAAGTGAGAAATCATACCCCTGCCCGGTTTAATGTTGGGAGTTATGCAGACTTTTAATCCCTTAAGAAGGGGATGCTGCT
TTGCACGGGCCAAAGATGTACGCATGGAAAACCCTTCCTTTTCCTTTTTGCTATCTTTTAAGATGTAATTCTTCTCATCTAACAGG
CATCTTGTTTGTCCACAGCTCTCCAGCCATAGAGGTGTAACAACAGGCTTACCAAGAGCTATGGCTTCCAACC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_192222 BRCT domain-containing DNA repair protein [Arabidopsis thaliana]5925e-059
XP_002872794 hypothetical protein ARALYDRAFT_490249 [Arabidopsis lyrata subsp. lyrata]5371e-052
XP_002520697 pax transcription activation domain interacting protein, putative [Ricinus communis]5137e-050
AAD14441 hypothetical protein [Arabidopsis thaliana]5074e-049
XP_002320375 predicted protein [Populus trichocarpa]4842e-046

Swiss-Prot top hits (Blast detail)Scoree value
Q6NZQ4 PAX-interacting protein 12373e-019
B2AWS3 Actin cytoskeleton-regulatory complex protein PAN11451e-008
P13983 Extensin1423e-008
Q9LUI1 Leucine-rich repeat extensin-like protein 61423e-008
Q9T0K5 Leucine-rich repeat extensin-like protein 31381e-007

TrEMBL top hits (Blast detail)Scoree value
B9S3X8 Pax transcription activation domain interacting protein, putative5135e-050
Q9ZR18 Putative uncharacterized protein AT4g031305072e-049
B9I9Y2 Predicted protein4841e-046
B8AXY3 Putative uncharacterized protein4392e-041
B9FMF2 Putative uncharacterized protein4392e-041

Arabidopsis top hits (Blast detail)Scoree value
AT4G03130.1 transcription coactivator5922e-061
AT3G21480.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: transcription coactivator (TAIR:AT4G03130.1); Has 489 Blast hits to 455 proteins in 115 species: Archae - 2; Bacteria - 37; Metazoa - 270; Fungi - 30; Plants - 45; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).4157e-041
AT4G03120.1 proline-rich family protein2661e-023
AT1G61080.1 proline-rich family protein1405e-009
AT4G13340.1 leucine-rich repeat family protein / extensin family protein1389e-009

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
72  100%

Unigene MembersMember information