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Information for unigene UN48214
| FASTA Sequence |
| Unigene ID: UN48214 | Length: 695 |
SSR | | GTTTTTATTGCAGGTCTGATGCAACTCTTCCTTGTCTCGTTTTACAATTGAAACAATTACAAAAAAAAAGATTAATATTCAAGCAA
AACCAAAAACAAGAACAACGGTCTGTTGAATCATTCTTTCTCATATTACCCGATGAAAAAGATAACATATTATTAATCTCAAATGA
AACATTCATTCATCATCATCATCATCATCATATGACTTTGTGAGAGAAACCAAGAAGAAATCACCAGACATCAGGACGGAGTTCCC
CAGTGGCCGGTGGCATCCAACGACCAGAATTGTAGACGTTCTCACCAACTTTCCATCCCGGAACATCCTTCATTACATCAGCCTCG
TAGTCCAGATACTTTTTCCACTCCGACACAAACCTTTCATCTTCTTCAGCTTGAAGAATGGGAAGTATAGCTCTACGAGCAGCATA
TTTCTCTTCCTTCAACGCCCTTCGGATTTTGTTTCCTTGCCCGACCTGGTACATTCCCCAAGCAAAGGCACCCGAAACGGTGAGGA
AAATGGCCATGGCGCTAGGACCCGTGTTGGATATCCGACGAGCGTATCGGACCGGCGCGAACCCGCCCGGTGGCGGACCATCCTGA
AGCAGCGGCATATCCTTCACACTCGCCATCCCCGGCTTCTTCCTTATCATCGCCTCCGTCATCTTCGCTCGATCGAATTGACTCTC
TGTTCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_565761 NADH dehydrogenase [Arabidopsis thaliana] | 760 | 9e-079 |
| XP_002892230 hypothetical protein ARALYDRAFT_470446 [Arabidopsis lyrata subsp. lyrata] | 751 | 1e-077 |
| NP_171957 GRIM-19 protein [Arabidopsis thaliana] | 743 | 9e-077 |
| ACJ85924 unknown [Medicago truncatula] | 699 | 1e-071 |
| XP_002297835 predicted protein [Populus trichocarpa] | 680 | 2e-069 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q95KV7 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 | 272 | 2e-023 |
| Q0MQ89 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 | 269 | 4e-023 |
| Q9P0J0 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 | 269 | 4e-023 |
| Q0MQ90 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 | 269 | 4e-023 |
| Q4R6H1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 | 267 | 7e-023 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O49313 Expressed protein | 760 | 7e-079 |
| Q8RWA7 Putative uncharacterized protein At1g04630 | 743 | 6e-077 |
| B7FME1 Putative uncharacterized protein | 699 | 8e-072 |
| B9GMI9 Predicted protein | 680 | 1e-069 |
| B9RWQ3 NADH dehydrogenase, putative | 679 | 2e-069 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G33220.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, plastid, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GRIM-19 (InterPro:IPR009346); BEST Arabidopsis thaliana protein match is: MEE4 (maternal effect embryo arrest 4) (TAIR:AT1G04630.1); Has 226 Blast hits to 226 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 53; Plants - 38; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | 761 | 3e-081 |
| AT1G04630.1 MEE4 (maternal effect embryo arrest 4) | 744 | 3e-079 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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