Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN48244

FASTA Sequence
Unigene ID: UN48244Length: 973 SSR 
CCTTGCAAGAAACCATTCAAAAAACTTATTCATGTAGGTTAACAAATGTTACAAACCAGATCAACTATTGATCTCTCAGAACATTC
TTGACTGTAATTCAAAAGCCCCAAAACACCAACAAATCAACTCAAAGAGTGACAGAAAAGAGTGCACTCACTCACTCACTCACTGG
AATTTATTCTTCTGTACACTAATTGAGGAAAAGAGGAGAGAGAAGCTTGAGGAGACGTCTTACTCTACTCTCTCACCTCTCCAGAC
AACGTTCCCTCCTCTTCTTCCCCATCGAACTCTTGTTCTACACCTTTCACCTCGGGTACATAATGCATGAGCATGTTTTCTATTCC
AGATTTTAATGTAACAGATGAGCTTGGACAACCGCTACAAGGTCCTTGCATCCTCAGCTTCACTATTCCGCTTTCAGGATCAAACC
CACAATACTCAATGTCCCCACCATCATCTTGGACTGCTGGTCTGATGCGTGTTTCCAAAAGTTCCTTGATCATTGCCACGGTTTCA
GTGTCATCCTCGTTAATAGCAGTATCCTTGGCAGCAGCAGCTTGCGAGTCCAGAAACAGAGGCTGACCAGAAGAGTAGAAATATGA
CAGCTGCAAATATCTCAGGCTTGAGTATATCCCATGATACATCATCTGACTTTGTCACAGTGACGAAATCAGACCCAAAGAAAACT
CGAACCACACCATCGATGGAGTAAATGGACTTGGCCAATGAAGAATTTAAAGCTGAACGAACGTTAGGAAAATCAGCACTTCCAAC
CTCCATGACTGGCTTTCCAGGATAAAACATGAGAGAAGAAGGATTCGGAGTTGATTGCGTTTGTATAAACATGGTCCTTCTCTGCC
CTCCGAGAAAAGCCCATTTCTGAGGAAGTGAAGAAGATCTCAAAGAGGAGGAGGAGGTTAGATCAGGTGAATTGGTCGGAAAGTGC
GTAGCCGCCGAGATGAAGAAGAGTGAG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_566673 NifU-like protein 4 [Arabidopsis thaliana]5801e-057
NP_175550 NifU-like protein 5 [Arabidopsis thaliana]5316e-052
AAD30650 Similar to human CGI-33 protein [Arabidopsis thaliana]5316e-052
XP_002891637 hypothetical protein ARALYDRAFT_892107 [Arabidopsis lyrata subsp. lyrata]5316e-052
XP_002264979 PREDICTED: similar to NFU4 (NFU domain protein 4) [Vitis vinifera]5146e-050

Swiss-Prot top hits (Blast detail)Scoree value
Q9LIG6 NifU-like protein 4, mitochondrial5806e-059
Q9C8J2 NifU-like protein 5, mitochondrial5313e-053
B3NYF7 NFU1 iron-sulfur cluster scaffold homolog, mitochondrial3281e-029
B4IMF6 NFU1 iron-sulfur cluster scaffold homolog, mitochondrial3281e-029
B4R3T1 NFU1 iron-sulfur cluster scaffold homolog, mitochondrial3281e-029

TrEMBL top hits (Blast detail)Scoree value
B9HVY4 Predicted protein5127e-050
A9NNH0 Putative uncharacterized protein5092e-049
B9SG71 HIRA-interacting protein, putative5092e-049
C5Z0J5 Putative uncharacterized protein Sb09g0043105092e-049
B4FCD0 Putative uncharacterized protein5046e-049

Arabidopsis top hits (Blast detail)Scoree value
AT3G20970.1 NFU4; structural molecule5805e-060
AT1G51390.1 NFU5; ATP binding / structural molecule5312e-054
AT3G20970.2 NFU4; structural molecule4911e-049
AT5G49940.1 NFU2 (NIFU-LIKE PROTEIN 2); structural molecule1513e-010
AT5G49940.2 NFU2 (NIFU-LIKE PROTEIN 2); structural molecule1513e-010

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
122  100%

Unigene MembersMember information