 |
Information for unigene UN48263
| FASTA Sequence |
| Unigene ID: UN48263 | Length: 739 |
SSR | | GTCTCTCCCTCTCTCTCTCTCTCTTCACCTCTCTGATCATCAATGGCTGCGACAATGGCTACATCAGCCAAATGCATGTCCCTAAA
CCCATCTCCTCCCAAACCCCTAAACCAAACCAAACCCACCTCCTCAAAACCCTTCATCACCCTCCCAACTCCACCTAAATCCACCG
TCTCCCTCGCCGTCACGAGCACCGCCCTCGCCGGAGCCGTCTTCTCCGCCCTCAGCTACTCCGAACCCGCTTTCGCAGCTCACCAG
ATCTCCCAGCTCGCCGCCGCCGCTCAAGGTAGCGACAACCGCGGCCTAGCTCTTCTCCTCCCCATCGTCCCGGCCATCGGATGGGT
CCTCTTCAACATCCTCCAGCCGGCTCTCAACCAGATCAACAAGATGCGCGAGAGCAAAGGACTCGTCGTTGGTCTCGGTGGCATCG
GCGGTGGTCTCGCCGCGTCAGGGCTCTTGACGCCGCCGCCGGAGGCAGTAGCCGCGGCGGAAGCGGCGGAGAGAGCTGGAGACAAC
AGGGGACAGTTGTTGTTGTTCGTGGTTGCACCGGCGCTGCTTTGGGTTCTGTACAATATATTGCAGCCGGCTTTGAACCAGCTCAA
CAAAATGAGGTCTCAGTGAAACTCTTTTACAATATAATAATTAGTCATCGTTCGTTGGGTTTCAAATGTATCATTAATCCTTTGTT
ATATATCTCGCTTACTATATACTCGATTTAACTCCAGAACTTTACTACCGC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_176940 photosystem II protein psbY-2 [Arabidopsis thaliana] | 748 | 3e-077 |
| XP_002888618 hypothetical protein ARALYDRAFT_475878 [Arabidopsis lyrata subsp. lyrata] | 735 | 8e-076 |
| AAM65279 unknown [Arabidopsis thaliana] | 734 | 1e-075 |
| ABK96304 unknown [Populus trichocarpa x Populus deltoides] | 540 | 3e-053 |
| ABK96551 unknown [Populus trichocarpa x Populus deltoides] | 536 | 1e-052 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O49347 Photosystem II core complex proteins psbY, chloroplastic | 761 | 4e-080 |
| P80470 Photosystem II core complex proteins psbY, chloroplastic | 506 | 1e-050 |
| Q9FPQ6 Vegetative cell wall protein gp1 | 141 | 3e-008 |
| Q9S8M0 Chitin-binding lectin 1 | 136 | 1e-007 |
| P21997 Sulfated surface glycoprotein 185 | 120 | 8e-006 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q549N8 Putative uncharacterized protein | 748 | 2e-077 |
| Q8LAL4 Putative uncharacterized protein | 734 | 8e-076 |
| A9PIV1 Putative uncharacterized protein | 540 | 2e-053 |
| A9PJJ8 Putative uncharacterized protein | 536 | 7e-053 |
| A9PJ80 Putative uncharacterized protein | 521 | 4e-051 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G67740.1 PSBY | 761 | 4e-081 |
| AT1G62760.1 invertase/pectin methylesterase inhibitor family protein | 129 | 7e-008 |
| AT1G44191.1 Encodes a ECA1 gametogenesis related family protein | 128 | 9e-008 |
| AT1G68690.1 ATP binding / protein kinase/ protein serine/threonine kinase | 124 | 3e-007 |
| AT3G19430.1 late embryogenesis abundant protein-related / LEA protein-related | 123 | 3e-007 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
