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Information for unigene UN48311
| FASTA Sequence |
| Unigene ID: UN48311 | Length: 1585 |
SSR | | CTGATGAAAAATTCAATTTTCAACAATAACATTATTGATCTGTTTCAGCAAATTATATCGGCAACAAATATGCAATTGCCTCAACC
ACATAGAAATGGACTAGAACCATAGGAAAAAAATCTCTCAACAAATAGCTCTTTTTTCTTGTTTAAAACCAACCCCTTTTAGCCTA
ATCAGCTAATGCCTTTACAGCTTTCTCTGCTGCGTCATCCAAATCATCAGCTGTTATGAGTTTCATTCCACTCTCCTTGAGGATTC
TCTTTCCTTGTTCAACATTTGTTCCTTCCAGACGAACCACCACTGGTACTTTCAGTGACACCTCTTTAGCAGCATTCACAATTCCA
CTAGCAATCACATCACATTTCATTATCCCACCGAATATGTTCACCAATATTGCTTTCACTTTATCGTCCGATGTCAGTATCTTAAA
CGCCTCCACCACCTGGTGTTCAGAAGCGTTTCCACCAACGTCAAGGAAATTTGCGGGTGTCCCACCGTGGAGTTTAATGATGTCCA
TGGTTGCCATGGCCAATCCCGCACCATTCACCATGCACCCAATCTCTCCATCTAAACCGATATAGTTCAGGTCTACTTTTGCTGCA
GCCACCTCTCGTGGATCCTCCTGTGTTGGATCACGAAGGGCAAAAATCTCTTTCTGACGGAAAGCAGCATTATCATCAAAGTTCAA
CTTAGCATCAGCAGCTACCAATTGGTTCGTGGATGTCTCAGCGAGAGGGTTGATTTCCCAACATAGTGCAGTCACTCTTGCGAAAG
AGTTCGTAAAGCTTCTTCACTTGTTCAATCGAATCTTTTCTGTCAGCAGCTTTTGGAGCCAGACCATCCACAACCTTGGCAGCATC
TTCATCTGTAATTCCTGCAAATACATCGATCGGTACCTTTATAATCATGTCAGGGAACTTCTCAGCAAGATCTTCAATGCTAGTAC
CACCCTTCTTACAGGCAATTATAAGCGGTCCAGCAGATTTACGGTCGAGAATAATGGAAAAGTACATCTCATTGACGAGTGACAAC
TTCTCACACAAGTAAACCTAGCTGACTACTTTGCCTTGAGGACCAGTTTGTTTGGTGACGAGTACTTGTCCAAGCATCTTTCCAGC
AATGTCTTGAACCTGATCACGTTTGACAATGTGAACACCACCTTGAAGACCACTCTTGAAAGTCCCGAGACCTCTTCCACCAGCCA
AGATCTGGCTCTTAACGACCAACTCGGTTTCATTAGGGAAAACTTGTTCGATAGCGTTTTTAACTTCATCGAGAGAAGAGACAGCG
ACTCCGTTGGGCACATTCACTCCGTATTTACCCATCAGCTCTGCTCCCTGGTACTCGTGGATGTTGAGACGGCGAAGCTGTTGGTG
TTGCCATTTGCCGGAGACGGAGAGAGATCTGGATACGAGCTTCTTCACCAATCCCCTCATACTTTCGATTTTTGTCTTACGGTAAA
AAAAAATGAAAATCGATCAGAGAAATATAGAGAGAGAGAGGAGGAAGAGAAGAGTCGCAGGGAGTCTAGGGTTTTTAATTTTCTCA
AATGATCGATCTTTCTCCCTTAAGAAATGAGAGTTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002884202 hypothetical protein ARALYDRAFT_480870 [Arabidopsis lyrata subsp. lyrata] | 1084 | 1e-115 |
| NP_179632 Succinyl-CoA ligase [GDP-forming] subunit beta [Arabidopsis thaliana] | 1083 | 1e-115 |
| AAM65138 succinyl-CoA ligase beta subunit [Arabidopsis thaliana] | 1083 | 1e-115 |
| ABQ10186 succinyl-CoA ligase beta subunit [Caragana jubata] | 997 | 1e-105 |
| XP_002320625 predicted protein [Populus trichocarpa] | 995 | 2e-105 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O82662 Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial | 1083 | 5e-117 |
| Q6K9N6 Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial | 971 | 5e-104 |
| Q869S7 Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial | 713 | 4e-074 |
| Q55AI5 Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial | 692 | 1e-071 |
| B2UMH5 Succinyl-CoA ligase [ADP-forming] subunit beta | 680 | 3e-070 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LAV0 Succinyl-CoA ligase beta subunit | 1083 | 8e-116 |
| A5HIG2 Succinyl-CoA ligase beta subunit | 997 | 8e-106 |
| B9IBF2 Predicted protein | 995 | 1e-105 |
| Q2PYW7 Succinyl CoA ligase beta subunit-like protein | 989 | 7e-105 |
| A5BF93 Putative uncharacterized protein | 984 | 3e-104 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G20420.1 succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putative | 1083 | 5e-118 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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