RadishBase

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Information for unigene UN48424

FASTA Sequence

Unigene ID: UN48424	Length: 1231	SSR
AAAAAAAAATACAAAAACAAATATTACAATTCTCAGTTTGAAGTACTGCTTCCTTTTGAGAGAGCTTCAACGCATTTTGTAGTGTT GAGTTCTTGAGACCTTGGAGTGCTGACCATCCAAAGAATAGCTTAGCTTTATGTCAACGTCTCGAGGATTCTTCTTGTTATAAAAA ACAGACATGCTTCCAGATATCGTCTCACCTTCACATATTGTTAACACATCTTCAAGGTACATGACTGTTTGTTTCCAGTGCGTAGC CCTTGATTTTGGTCCTGTTGAAAAACCTAAAAGCTTGTGGCACATGGTAAACGACACATCAAAGTAGGCCACAAGGGCGTGGATGT AGTCGTTACGTTGTGCAACTAGTTTAAAGGGAGCTGTGAAGGAAGCATCACCAGAAGACATCTTTGAAATAACCATCGTCTTAAGT AGCCTACTATCGGTAACAATCTGCTTTTGATCCACGGTGTCAACAAGCGGCTCCATCATAGCCTTTTTCTTGATGCATGACATGTC AAAACCATACACGCTGTTCCAAAATTCAATTTTGTCTTCTTTATACTCTGAATCCTCTATGGCTGTAAGAAACAGGGAAGCTTTGT CTGGTAGCACAACCCCACCATCAACAAGCCATTTGTTGCGAGCGTAAAGGACACTGTCCAACATGTTTTCAAACAAGAGAAAGTAA CCCATCCATTCAGATATAATCACATCCACTTTGGGAGTAGGAAGCTCTATCTCCTCAATCTTCCCTTTCAATACCGTTATAACATC AGAGAATCCATTGGCTTTAACAATCTCCTTAGCCATGTCAGCCATTTGAGAACATTCGACAGCGTAGACATGTTTAGCTCCAGCTT TGGCACAGAAGAGAGATAAGATTCTAGTGCCAGCACCAACATCAAGAACAACTTTGTCCTTGATGAGAAACTTGTTTTGGTAAATT ACGTTCTGATAAGCCTTTGTTCTCACTACATCCTTCAACATCTCTTCATGAATCCCGAAGTGGGAGTAGGAGTCGAAGTAGTAATC GGCGCTGGTGGTGTCATCGGTGGTCTCTGCGGCGTCGGACATGGATTCATCTTGGGCGGCTTCAGAGGAGCCTTGTGCAGCTTCGT CTTCGAAGCGTATCTTCGTGTTCAGATTGTTGTTGTTAGTCATTGTTTCTTCCAGTTCGCGCAGACGAGAGAGAGAGAGGGTTTTA GGAATAGAGAGGAAGTGGAAAGATTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002869429 hypothetical protein ARALYDRAFT_491807 [Arabidopsis lyrata subsp. lyrata]	1649	2e-181
NP_194680 protein arginine N-methyltransferase 1 [Arabidopsis thaliana]	1643	1e-180
AAL36326 putative arginine methyltransferase pam1 [Arabidopsis thaliana]	1636	7e-180
CAA07570 arginine methyltransferase [Arabidopsis thaliana]	1568	5e-172
XP_002883976 hypothetical protein ARALYDRAFT_343233 [Arabidopsis lyrata subsp. lyrata]	1533	6e-168

Swiss-Prot top hits (Blast detail)	Score	e value
Q9SU94 Probable protein arginine N-methyltransferase 1.1	1643	4e-182
O82210 Probable protein arginine N-methyltransferase 1.2	1532	3e-169
A2Z0C0 Probable protein arginine N-methyltransferase 1	1464	2e-161
Q0J2C6 Probable protein arginine N-methyltransferase 1	1464	2e-161
Q28F07 Protein arginine N-methyltransferase 1	1027	1e-110

TrEMBL top hits (Blast detail)	Score	e value
C6TMT8 Putative uncharacterized protein	1475	2e-161
C6TDK1 Putative uncharacterized protein	1474	3e-161
C5XAM2 Putative uncharacterized protein Sb02g022770	1473	4e-161
B7EPL4 cDNA clone:J013102P20, full insert sequence	1464	4e-160
B9RKB5 Protein arginine n-methyltransferase 1, putative	1458	2e-159

Arabidopsis top hits (Blast detail)	Score	e value
AT4G29510.1 PRMT11 (ARGININE METHYLTRANSFERASE 11); protein-arginine N-methyltransferase	1644	3e-183
AT2G19670.1 PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A); protein-arginine N-methyltransferase	1533	2e-170
AT3G20020.1 PRMT6 (PROTEIN ARGININE METHYLTRANSFERASE 6); methyltransferase	561	1e-057
AT3G12270.1 PRMT3 (PROTEIN ARGININE METHYLTRANSFERASE 3); methyltransferase/ zinc ion binding	480	3e-048
AT1G04870.2 PRMT10; [myelin basic protein]-arginine N-methyltransferase/ histone-arginine N-methyltransferase/ methyltransferase/ protein-arginine omega-N asymmetric methyltransferase/ protein-arginine omega-N monomethyltransferase	382	6e-037

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	2			100%

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