RadishBase

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Information for unigene UN48443

FASTA Sequence

Unigene ID: UN48443	Length: 1338	SSR
AACTAATGGAATTGACTTACTCGTTGAAAAACTCAAATTTAACTTGAGATATTTATTCACTTTAATAGTTGAAAACGACAAACGAA AAAAGATGCTTAAAATAAATTATCCAAGATACCAGCATCAAGATTTTTCAAATGGATTATTTGGACGTGAAAACTTCATATCAACG TCCAAAGGAGCTCCACTACGTCCGCCACGACCATTTACGCTGCTCACATTTCCTCCACTGACGCCAAGAAAGTCCAAAGTCAACCT ATCGGAGCCTCCCATGCTAAGATTGTTTCCAAAATGAAGGTCGAAAAGACTGCTACCGGGCCGGCCTTGCTGATCTGTTGTCGCAG CTAGAGAGTTCATTAGACCTTGAAGGTTTCCATTATCACTATCTCCAAAGTCATTAACGACCACACTTGAAGAAGATGAAGAAGTT AACCCTCTAAACAAAGCAGACGGATCGTTGTTATCGGCATTGGTGAAAAGAGAAGGAACACTTGTATGATCAGAGTTCTTAGTGTT CTCTTGAAAGTATCCGAGGTTGAACAAGCTATTGTTGTTGTTGTTGTTGTTGTTGATGTTATCACCTAGGCTGATGAGACCATGCT GGTTCATGAGAGTCTGATCGTTCTGCGCCATCAATCCCTTGGTTTGGAGGGCATTGCATGAGAAAGTTGGTAGGACCAGGATTAGG GTTTGTGGGCTGAGAAACGAAGGCTTCAAACTTTTCGGTAGATGAACGGTTCAGATTGTAACCTGCAGCTAGAGGGGTAAAACTAG TGTTTGAGTTGTTACCGAAATGGTTGTGAGAGAGAGCACGTGAAGGGGTCATGGTGAACGCACGTGGGCTCCGGACACAGATACAC CTTCCTCCTGATCACTTCTTGTTTAGACTTTTGTTTCAGCTTCCATGGAAGGTTGTGTCCTCTTCGGTGAAGCTGTAGATTCTGTT CTCTTTGAAACCCTTTGTTGCACACTTCACATAGGAATCTGTTCGTCGCCATTATCGTCTTTGGAGATAACGCTATCACTTCAGCA TCTGGATTTGGGTTTCCGGGTTGGTTTCTTCGTTTCTTGGGTGGTGGTAGTGGAGCAACGGAGTTGGGTTGTTGAATCATCTTCAT CGCCGTCTCTTCGCGGTTAAAGTTGTTTGCTCCGGTGGCGGCGCTGGCCAGGAGAAAAGACTGAGTGGAAGATGATGAAATTGAGT TGTTGTACGATGAAGACATCTCCTCAGAGTCTCCTTTTGCTAAATCTCAAAAAACCCTATCTTTCTCTCTCTTTCTCTCTTTTTTT TTTTTTTGAACAACTCTCTCTCTTTCTCTCTTGTTCTGCTTTTTTAAT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
BAJ34269 unnamed protein product [Thellungiella halophila]	747	9e-077
NP_172910 C2H2-like zinc finger protein [Arabidopsis thaliana]	568	5e-056
ADN34113 nucleic acid binding protein [Cucumis melo subsp. melo]	443	2e-041
XP_002882851 hypothetical protein ARALYDRAFT_478784 [Arabidopsis lyrata subsp. lyrata]	441	3e-041
AAS79563 At3g13810 [Arabidopsis thaliana]	439	5e-041

Swiss-Prot top hits (Blast detail)	Score	e value
Q700D2 Zinc finger protein JACKDAW	404	2e-038
Q9ZWA6 Zinc finger protein MAGPIE	379	2e-035
Q9FFH3 Zinc finger protein NUTCRACKER	372	1e-034
Q54B37 RhoGEF domain-containing protein gxcJ	128	2e-006

TrEMBL top hits (Blast detail)	Score	e value
Q8RWX7 Putative zinc finger protein	568	4e-056
Q700C1 At3g13810	439	3e-041
Q9LRW7 AT3g13810/MCP4_2	438	4e-041
B9SN27 Nucleic acid binding protein, putative	431	3e-040
Q8H1F5 Putative zinc finger protein	423	2e-039

Arabidopsis top hits (Blast detail)	Score	e value
AT1G14580.1 zinc finger (C2H2 type) family protein	654	2e-068
AT2G02080.1 AtIDD4 (Arabidopsis thaliana Indeterminate(ID)-Domain 4); transcription factor	570	1e-058
AT3G13810.1 AtIDD11 (Arabidopsis thaliana Indeterminate(ID)-Domain 11); nucleic acid binding / transcription factor/ zinc ion binding	438	2e-043
AT1G55110.1 AtIDD7 (Arabidopsis thaliana Indeterminate(ID)-Domain 7); nucleic acid binding / transcription factor/ zinc ion binding	423	1e-041
AT2G02070.1 AtIDD5 (Arabidopsis thaliana Indeterminate(ID)-Domain 5); nucleic acid binding / transcription factor/ zinc ion binding	421	2e-041

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	1			33%


12	2			67%

Unigene Members	Member information