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Information for unigene UN48481

FASTA Sequence
Unigene ID: UN48481Length: 1251 SSR 
GGACAATTGTCTTCCCCTTCTTCTTCTTTCTTCTCTTCCTGTCGCGAAGATCGAAAAATCATCATCTCAAACCTTCTCCGATTATT
CTTTGGATTGATGAGTTAAGGGTTAAAAGCTGAGTAACCCCCCATACACAGCATTTCAAGTCGTTAGTGAATTAAAAAAGAGAAGA
AATGGCTTGTAGAGGTTGTTTGGAATGTTTGCTTAAGTTACTCAACTTCCTTCTTGCTGTTGCTGGACTAGGCATGATTGGTTATG
GTATCTACTTATTTGTTGAGTACCAGAGAGCAACTGGTGATCACTCTGTTTCATTCATTCCCGACCAAAGTTACGTCTCTTCTGGG
AGGCCCATGCTTATGTCTCTCGCACTCTCTTCCAATTTCTTTGACAATCTCCCCAAAGCTTGGTTCATCTACTTGTTCATCGGTAT
CGGCGTGGCTCTCTTTGTTATTTCATGCTGTGGCTGTGTTGGTACTTGTTCAAGGAGCATCTGCTGCTTATCTTGTTACTCTCTGC
TTCTCATCTTGTTGATCTTGGCTGAGCTTGGAGCTGCAGCTTTTATATTCTTCGACAACAGCTGGAGAGATCAAATTCCTTCTGAC
AAGACTGGAAACTTCGACACCATCTATCATTTCCTGAGAGAAAACTGGAATATTGTCAGATGGGTTGCTCTAGGAGCCGTTGTTTT
CGAGGCTTTGCTTTTCTTGCTCGCCCTTATGGTCAGGGCAGCTAACACACCAGATGAGTATGACAGTGATGATGAGTTTATTGCTC
CTCCTAGGCAAATCAGGCAGCCATTCATCAACCGCCAACCCGCCCCTGTTACGGGTGTCCCTGTTGCTCCTACTTTGGACCAACGC
CCGAGCCGCAGTGACCCTTGGAGCGCACGTATGAGGGAGAAGTATGGGCTAGACACATCTGAGTTCACATACAATCCCTCAGAGTC
ACACCGGTTCCAGCAAATGCCGACGCAACCAAATGAAGAAAAGGGACGATGCACCATCATGTGAGTCCCATGTTATAACGGTCTCA
AATCAAAAGTTCAGTCAATTCTCTTTTCTTGTTATCTTTTTTGCGTGTGTGTGTGTGTGTAACAATCAAGAGTGTGAGTGATATTA
TTAGAGGTATGCTTCTATGGAAACTCTTTTTGTTGCGTCTGTGTAGTCTTTTTTGTAAGTACTTTACCATCATGAATATTCATCTT
GGTTGTCTGATTTGGTCCTCTCATTTTTATTATAGATAAAATTCATC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAJ34310 unnamed protein product [Thellungiella halophila]13364e-145
NP_564399 tobamovirus multiplication 2A protein [Arabidopsis thaliana]13185e-143
XP_002893721 hypothetical protein ARALYDRAFT_473428 [Arabidopsis lyrata subsp. lyrata]12998e-141
XP_002527636 conserved hypothetical protein [Ricinus communis]10741e-114
ABK92751 unknown [Populus trichocarpa]10524e-112

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9C5W7 At1g32400/F5D14_2213183e-143
B9SNR7 Putative uncharacterized protein10747e-115
A9P8P8 Putative uncharacterized protein10522e-112
C6TMZ7 Putative uncharacterized protein10381e-110
C6THF2 Putative uncharacterized protein10362e-110

Arabidopsis top hits (Blast detail)Scoree value
AT1G32400.1 TOM2A (TOBAMOVIRUS MULTIPLICATION 2A); protein binding13191e-145
AT1G32400.2 TOM2A (TOBAMOVIRUS MULTIPLICATION 2A); protein binding13191e-145
AT1G32400.3 TOM2A (TOBAMOVIRUS MULTIPLICATION 2A); protein binding13191e-145
AT2G20230.1 LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28770.1); Has 91 Blast hits to 91 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).3021e-027
AT4G28770.1 FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20230.1); Has 94 Blast hits to 94 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).2877e-026

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
114  57%
 
211  14%
 
181  14%
 
121  14%

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