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Information for unigene UN48510
| FASTA Sequence |
| Unigene ID: UN48510 | Length: 1184 |
SSR | | GAGAAAGCACATCGAGAGAGAGAGAGAGACATGTCTGCCTCCGCTTCTCCCGTTTCCCTCTCTTCCTTCAATCCCAAATCCCTTCT
TCCTCTCTGCGTTTCCCGCTCCGCCTCCGTCTTACCTCCTTCACTCTCCTTCAAACTCCCCTCCCTCTCTCTCTTCACTTCCTCCG
CCCTCAAATCCTCCTCCTCACCCGCCCAGTACACATCTCTCTTCGTCACACACGTCGCCGTATCCTCTGATTTCGAGGTTGAGGAA
GACGACATGTTCGCTGATGACGATTCTCCGCCGCCGCAGGAGCGCAGCTCCTTCTCTGCTGACCTCAAACTCTTCGTCGGTAACCT
TTCCTTCGATGTCGATAGCGCTCAGCTCGCTCAACTGTTCGAGAGCGCCGGTAACGTTGAGATGGTTGAGGTTATCTATGACAAAG
TGACTGGCCGAAGCAGGGGTTTTGGGTTTGTGACTATGTCCTCTGCAGCTGAAGCTGAGGCTGCTGCTCAACAGTTTAATGGCTAT
GAATTTGAAGGTAGACCCTTGAGGGTTAACGCTGGCCCTCCTCCACCTAAGAGGGAGGAATCATTCTCCAGAGGACCAAGGAGTGG
TGGTTATGGTTCTGAACGTTCCGGTTACGGTTCTGAACGTTCCGGTTACGGGTCTCAACGTTCAGGACGTTCTGGTTACGGTTCTG
AGCGTTCTAGCTACGGTTCTGGGTCAGGGTCGGGCTCGGGCTCATCAGACCGTGTTTATGTGGGTAACCTTTCGTGGGGTGTGGAT
GACATGGCTCTTGAGAGCTTGTTTAGTGAGCAAGGAAAGGTTGTAGAGGCCAGGGTCATTTACGACAGGGAAACTGGTCGATCCAA
GGGTTTTGGGTTCGTCACACTCGGTTCTCCTCAAGAGGTCACAAGAGCCATCAGTTCTTTGAATGGAGCTGATTTGGATGGAAGAC
AGATTAGAGTCTCGGAGGCGAGGCTAGACCACCAAGGCGCCAATTTTGAGTTACCACGCAACTCCTGGAATCTATGAGGTTTAGCT
CATCTTGACTGGAGATGAGTTATTTATGTTTTGGGCTTATGTTTCTTTATTTCACTTTAATTCGTTTTACGCTTTGAATGTTTTGC
GTTTATCTTTGTAGACTAGGAGTTTGGACCTTGTTTTCTTTTTATATACTAGTACTCCCTTTCTTC
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| GenBank top hits (Blast detail) | Score | e value |
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| BAA06518 RNA-binding protein cp29 [Arabidopsis thaliana] | 1234 | 3e-133 |
| BAA06519 RNA-binding protein cp29 [Arabidopsis thaliana] | 1214 | 5e-131 |
| NP_190914 chloroplast RNA-binding protein 29 [Arabidopsis thaliana] | 877 | 6e-092 |
| XP_002877921 hypothetical protein ARALYDRAFT_348440 [Arabidopsis lyrata subsp. lyrata] | 871 | 3e-091 |
| NP_001190079 chloroplast RNA-binding protein 29 [Arabidopsis thaliana] | 845 | 3e-088 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q43349 29 kDa ribonucleoprotein, chloroplastic | 877 | 3e-093 |
| Q9ZUU4 Ribonucleoprotein At2g37220, chloroplastic | 618 | 3e-063 |
| Q08937 29 kDa ribonucleoprotein B, chloroplastic | 430 | 2e-041 |
| Q08935 29 kDa ribonucleoprotein A, chloroplastic | 424 | 9e-041 |
| P49314 31 kDa ribonucleoprotein, chloroplastic | 416 | 8e-040 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8L941 Putative RNA-binding protein | 622 | 2e-062 |
| Q7GA50 Putative RNA-binding protein | 618 | 5e-062 |
| B9S0K6 Ribonucleoprotein, chloroplast, putative | 493 | 1e-047 |
| C6TEA3 Putative uncharacterized protein | 451 | 1e-042 |
| B9MTC6 Predicted protein | 446 | 4e-042 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G53460.1 CP29; RNA binding / poly(U) binding | 877 | 2e-094 |
| AT3G53460.2 CP29; RNA binding / poly(U) binding | 877 | 2e-094 |
| AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 618 | 3e-064 |
| AT5G50250.1 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative | 263 | 4e-023 |
| AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding | 260 | 9e-023 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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