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Information for unigene UN48533
| FASTA Sequence |
| Unigene ID: UN48533 | Length: 465 |
SSR | | CGCGGAGAGGTTATACTACTTGTGCTCGCGAGATTCATCAGTTCGATTCCTTGGTCGTTTCTTCACCGGCGTAAATCATGACAACT
TCAAAGAGGCTCGCAGACAGGAAGATTGAGAGGTTTGACAAGAACATTACTAAAAGAGGTTTTGTTCCTGAGACCACCACCAAGAA
GGGCAAGGATTACCCTGTCGGTCCCATCCTCCTCGGCTTCTTTGTCTTCGTCGTCATTGGTTCATCTCTCTTCCAGATCATCAGGA
CCGCAACAAGCAAAGGCATGGCGTAAACGGAATCACTGTTCAAGCTTAGAGGAAGCGATGTTTTCAAGATTACTCTTCTTCTTCTT
CTGTCTTGACTGTTTTTCCCTTATACTGTAGAATGCGTTAACTTTCTGTTTACTTACATGTTATGAAGAATTTTGAGACTACTTTT
TTTATAAATTATCCAATGTTTAAAATCTTGTCTTG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAT38818 membrane protein [Brassica juncea] | 329 | 2e-029 |
| NP_564277 Ribosome associated membrane protein RAMP4 [Arabidopsis thaliana] | 326 | 5e-029 |
| AAF99731 F17L21.12 [Arabidopsis thaliana] | 321 | 2e-028 |
| ACU16910 unknown [Glycine max] | 320 | 2e-028 |
| XP_002514902 stress associated endoplasmic reticulum protein, putative [Ricinus communis] | 316 | 7e-028 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q3T073 Stress-associated endoplasmic reticulum protein 2 | 133 | 9e-008 |
| Q8N6R1 Stress-associated endoplasmic reticulum protein 2 | 133 | 9e-008 |
| Q6TAW2 Stress-associated endoplasmic reticulum protein 2 | 133 | 9e-008 |
| TrEMBL top hits (Blast detail) | Score | e value |
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| Q2M5F0 Membrane protein | 329 | 2e-029 |
| Q84K46 At1g27330 | 326 | 3e-029 |
| Q9FZK2 F17L21.12 | 321 | 1e-028 |
| C6T5A8 Putative uncharacterized protein | 320 | 2e-028 |
| B9RMD3 Stress associated endoplasmic reticulum protein, putative | 316 | 5e-028 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G27350.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ribosome associated membrane RAMP4 (InterPro:IPR010580); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27330.1); Has 267 Blast hits to 267 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 183; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). | 327 | 3e-031 |
| AT1G27330.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribosome associated membrane RAMP4 (InterPro:IPR010580); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27350.1); Has 267 Blast hits to 267 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 183; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). | 327 | 3e-031 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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