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Information for unigene UN48543
FASTA Sequence |
Unigene ID: UN48543 | Length: 885 |
SSR | | GGACGACGACGACGACGATGGCTTCTCTCGCGACTTCCATTGCCGGAGCTGGAACCTCCAAGATTCTCGTTTCATCATCTTCAAAG
AGAATTGGGTTTCCAAACTCGAGAGTCTTCTTCCTTTCCGCTAGACCGATCTCTAAAGTTGGGATCTTTCCCCGATCGGCGATACA
CGCTTCGAGCCAAGAGGAAACAAAGGCTTCACCTTTCGCATCCGTTGCGTCACCGCCGGGTCTATACTCAGCTCAGACTTTCGATT
TGACTCCTCAAAACGTCGACTTGGTCCTTGAAGATGTCAGGCCGTTCCTCATCTCCGATGGTGGGAACGTCGACGTTGTCTCTGTT
GAAGACGGCGTCGTTTCTCTCAAACTCCAAGGAGCATGTACTAGCTGTCCGAGTTCTTCAACAACCATGACGATGGGAATCGAAAG
GGTACTCAAAGAGAAGTTTGGAGATGCTTTGAAAGATATTCGACAAGTTTTTGATGAAGAAGTTAAGCATATAACCGTGGAGGCAG
TGAATGCTCATCTTGATATACTGAGACCAGCGATCAAGAACTACGGTGGAAGTGTGGAAGTTTTATCAGTTGAAGGGGAAGACTGT
GTTGTGAAGTACGTTGGACCTGAATCGATTGGAATGGGAATTAAAGCAGCGATTAAAGAAAAGTTCAAGGACATATCTAATGTTAC
CTTTACAAGCTAGAAACTGTATATGTAAAAAAAAAAACACAAAGTTGCTCTTTGTTTGAGCTTATTTCATTTTGTAATGTCCACAT
CACTAGTAGTCTCTTAGAGCTATCTTGCAAAGTTGATCAAGAACAGTGTGTAGACAAAGAAGCAAGTTGTACCAATCCTTTCACCA
GAAAATAAAAAGAACACTGTTTTAT
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GenBank top hits (Blast detail) | Score | e value |
NP_567219 NifU-like protein 1 [Arabidopsis thaliana] | 878 | 3e-092 |
XP_002278510 PREDICTED: hypothetical protein [Vitis vinifera] | 666 | 1e-067 |
ACU16433 unknown [Glycine max] | 652 | 5e-066 |
XP_002515241 Nitrogen fixation protein nifU, putative [Ricinus communis] | 645 | 3e-065 |
BAJ90385 predicted protein [Hordeum vulgare subsp. vulgare] | 635 | 5e-064 |
Swiss-Prot top hits (Blast detail) | Score | e value |
Q93W77 NifU-like protein 1, chloroplastic | 878 | 1e-093 |
Q93W20 NifU-like protein 2, chloroplastic | 253 | 4e-021 |
Q84RQ7 NifU-like protein 3, chloroplastic | 234 | 7e-019 |
Q84LK7 NifU-like protein 1, chloroplastic | 223 | 1e-017 |
O32119 Putative nitrogen fixation protein yutI | 173 | 8e-012 |
TrEMBL top hits (Blast detail) | Score | e value |
C6T431 Putative uncharacterized protein | 652 | 3e-066 |
B9RNA2 Nitrogen fixation protein nifU, putative | 645 | 2e-065 |
B9GSW6 Predicted protein | 629 | 2e-063 |
C5X1V6 Putative uncharacterized protein Sb01g037130 | 628 | 2e-063 |
C0P617 Putative uncharacterized protein | 619 | 2e-062 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT4G01940.1 NFU1; structural molecule | 879 | 1e-094 |
AT5G49940.1 NFU2 (NIFU-LIKE PROTEIN 2); structural molecule | 253 | 4e-022 |
AT4G25910.1 NFU3; structural molecule | 234 | 6e-020 |
AT5G49940.2 NFU2 (NIFU-LIKE PROTEIN 2); structural molecule | 212 | 2e-017 |
AT1G51390.1 NFU5; ATP binding / structural molecule | 136 | 1e-008 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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