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Information for unigene UN48590
| FASTA Sequence |
| Unigene ID: UN48590 | Length: 1127 |
SSR | | GGGAAGCAACTAGGAGAGTTAGCCATGTCCTCTGGGAAGCTGCAATTGGCAGAGGAATGCATGAAGTATGCGATGGATTTGAGTGG
TTTGTTACTGCTTTATTCTTCTCTGGGAGATGCTGAAGGCGTGTCAAAACTTGCAACACTTGCTAGAGAACAAGGGAAGAACAATG
TCGCCTTCCTTTGCCTGTTCATGCTGGGTAAATTGGAAGATTGTTTGGACTTATTAGTGGAGAGTAACCGGATACCAGAAGCTGCT
CTGAAGGCAAGATCATATCTTCCAAGCAAAGTCTCTGAGATCGTAGCTCTGTGGAGGAAAGATTTGAGCAAGATTAATTCAAAAGC
AGCAGAATCTTTGGCCGATCCTGAGGAGTACTCAAATCTTTTTGATGATTGGCAAGTTGCTCTTTCCGTCGAAGCAAAAGCTGCAG
AGACAAGGGGAGTTTACTCAGCTGCCGAAAACTATCCTAGCCATGCTGATAGATCATCCATGACCCTAGTGGAAGCCTTTAGAAAC
TTGCAAGTTGAGGAAGAGGAATCATTTGAAAATGGAGACATGGATCATGAGCAGGAGGTAGTAGCAGAAGAAGAAAATGGAGATGA
AGAAAGGAATGAAGAAGAAGGAGTGGTTGTTGATGGTGACTCAACCGATGGAGCAGTGCTTGTAAATGGAAGTGAGGCTGAAGAAG
AGTGGGATACGAATAATGAAGGAAACCCATCAGCTTAATAGCAAAAGTAGTTGCAAGGCCAATGTCTGAATATTTTGTCTTGAGTG
AGCAATGGCCAAAGTTGAAGCAACAATGGTGATGAGGTGACTAAGATTGTTTCTGAACAACATGGCTCAAGTATTCGAGCAGCATG
GAACCACATTCCTTGAAGAGTTTGATACCCATTGTAATAAGAAGTTTTTAAAAGAAGATTTTGAGGATTTAGATGAAAAGAGAGAG
AGAGTTGCTCAAAGGAAAAATGGTAGTAGTGTTCCTTTTGTTCGTCTCTTTTGCACTGAGAGGGAGATTCTTAGTATTATTATTAC
ACATGGTTTTGTTTCTTCTTACAAATTACTGTTTTTTTATCTTGCCTGTAAAATGATTTGTTTTGTTTTTGTCGATGTTACAAAAA
TTTATTGTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAB02664 coatomer protein complex, beta prime; beta'-COP protein [Arabidopsis thaliana] | 1009 | 3e-107 |
| NP_188219 coatomer subunit beta'-3 [Arabidopsis thaliana] | 1009 | 3e-107 |
| BAH57004 AT3G15980 [Arabidopsis thaliana] | 1009 | 3e-107 |
| NP_001189908 coatomer subunit beta'-3 [Arabidopsis thaliana] | 1009 | 3e-107 |
| XP_002885121 hypothetical protein ARALYDRAFT_479052 [Arabidopsis lyrata subsp. lyrata] | 1007 | 5e-107 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8L828 Coatomer subunit beta'-3 | 939 | 2e-100 |
| Q9C827 Coatomer subunit beta'-2 | 929 | 2e-099 |
| Q6H8D6 Putative coatomer subunit beta'-3 | 798 | 4e-084 |
| Q6H8D5 Coatomer subunit beta'-2 | 795 | 8e-084 |
| Q9CAA0 Coatomer subunit beta'-1 | 754 | 5e-079 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9DFE3 AT3G15980 protein | 1009 | 2e-107 |
| C0Z2S5 AT3G15980 protein | 1009 | 2e-107 |
| A9PF13 Predicted protein | 961 | 7e-102 |
| B9SQC0 Coatomer beta subunit, putative | 947 | 3e-100 |
| B9GEK6 Predicted protein (Fragment) | 939 | 3e-099 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G15980.2 coatomer protein complex, subunit beta 2 (beta prime), putative | 1010 | 9e-110 |
| AT3G15980.3 coatomer protein complex, subunit beta 2 (beta prime), putative | 1010 | 9e-110 |
| AT3G15980.1 coatomer protein complex, subunit beta 2 (beta prime), putative | 939 | 1e-101 |
| AT1G52360.1 coatomer protein complex, subunit beta 2 (beta prime), putative | 929 | 2e-100 |
| AT1G79990.3 protein binding / structural molecule | 754 | 4e-080 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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