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Information for unigene UN48632
| FASTA Sequence |
| Unigene ID: UN48632 | Length: 1491 |
SSR | | CTATATATGAACATTCTCTACCGTAAATAGTGTACGAATAAACAATTCTTCATTCTTACAAAATGTAAAGCCCCCAAGACTTTTTG
TTCTTTCAACCACAATTTATTTACATTGCAAGACTGTCAAAGCCTCAAAGAAACTTTTGAAAGGGATGGGGGTAGACTCCAAATAT
CTTTTTTTCTCTTCCCTTCAATAAGTCCAAGAGTTAGTAATGAGTAGAATTTTCATACTCTGAGACTTCTTTTTCTCTATCTCCTA
GATTGAGATCCACCAGCCAAGACAGGAGGAACTCCAACATTCTCTGCAGTCTCCAGAGCGGTGTCTGTGTGGACAGGAGGGTGGAT
TACGGGTTGAAGTCTCAAGAAATAGCTATCGCTTTGTGGTTGGCTTCTTATGTACCGAGCTTCTGTTGTCTCCGTGTTCCCTTGTG
GGGGCTGTTGTGTTTCTGAACTCTGGAGGTTGGATAATGCTCTGAGATCAAGGTCTGGAAAGACCGAGCTCCGGCACCGAGGACAT
TTGACATTCAAGCGCAGCCACTGGTCTATGCACTCCACATGGAAATTATGGGCGCAAGGTAATCCTCTAACCTCATGTCCAATCTG
GAACTCCTCTAAGCAGATTAAGCATTCGCCGCAATCATCTGGGACAGCTTTTAGCCTGAACTTTGGAAGTTCTTGAATGAGTGCCT
CAACAGCTTCCGTCTGAGCTGGAGTCAAGTAAAGTCCAGGATGGTAAGTAGCAGCATCTTGATCCATGCTTCTCATCTCTTGTCCT
GCGGCTTCAACTGCCCAGTCCGGTACCCTGATCATGTCAACCAAAATACCAAATTCTGAACTCGGAATTCCCTGCTGAGCACGTAG
TGAGTGTACCTGTCTTCGGGCCAACCACTTTCCGACACAGATGCAATCAATGCAGAGGAGTCCACAGTAGCTGAACACGAGCCAAA
TGAGGAAACCCCATTTTTGGCCATCTTCAGGTAAACAGCTTTTAGCCCTAATAAACCATATAGTACCGATAACAGTCCAAGCCCAG
AGAAATGGATAGAGAAGGAGAGATAGGAGAGAGAGCACCACCACTCTCCCACAAAACCCAATGTTCCGCTGTTGACTTCCAAAATC
CAAGCCGAGACGAGCAGCAAGAGCATTGTCAAGAAACATAAGGACGCGGAAGATAAAGACGGTGGTGTAGTCGACCACAATCCAAA
TATGCAAAGGGTACTCGCACCTACTATACCTCTTCCAGTTGATACCAACAATAATTACACTAATGGCAAGCATAGACAAGAAGAAC
CCATCGTATAACTTGATATCGACACCTCTCATCGCCATGTGAGAGAGGTAGAGGAGAGAGAGTTCAAAAGGAGAAACCCTGAGAAT
GGAGATCAGAGATGGTTGAATCGAATTCGAAACGGGACTCAGAATCTTCTTCTTCAGCTGCTGATGCTGAGTGTCTCTATCTCTCT
TGGCGGAGAAAGAGAGAGAGAGAGAGAAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ADK63408 C3HC4 type zinc finger protein [Brassica rapa] | 1720 | 2e-189 |
| XP_002877589 zinc finger family protein [Arabidopsis lyrata subsp. lyrata] | 1646 | 6e-181 |
| NP_190382 E3 ubiquitin-protein ligase SIS3 [Arabidopsis thaliana] | 1631 | 3e-179 |
| BAC42060 unknown protein [Arabidopsis thaliana] | 1626 | 1e-178 |
| XP_002511411 protein binding protein, putative [Ricinus communis] | 1395 | 8e-152 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q5XIL0 E3 ubiquitin-protein ligase RNF167 | 144 | 4e-008 |
| O54965 E3 ubiquitin-protein ligase RNF13 | 144 | 4e-008 |
| Q66HG0 E3 ubiquitin-protein ligase RNF13 | 144 | 4e-008 |
| Q6NRV8 E3 ubiquitin-protein ligase arkadia-B | 143 | 5e-008 |
| Q0V9R0 E3 ubiquitin-protein ligase arkadia | 143 | 5e-008 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8GYT9 Putative uncharacterized protein At3g47990/T17F15_140 | 1626 | 9e-179 |
| B9RB36 Protein binding protein, putative | 1395 | 5e-152 |
| B9IEQ5 Predicted protein (Fragment) | 1332 | 1e-144 |
| Q6AUI1 Os05g0145000 protein | 1305 | 1e-141 |
| C5XMW0 Putative uncharacterized protein Sb03g024030 | 1303 | 2e-141 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G47990.1 zinc finger (C3HC4-type RING finger) family protein | 1636 | 3e-182 |
| AT1G60360.1 zinc finger (C3HC4-type RING finger) family protein | 161 | 3e-011 |
| AT2G20030.1 zinc finger (C3HC4-type RING finger) family protein | 149 | 8e-010 |
| AT4G26580.1 protein binding / zinc ion binding | 149 | 8e-010 |
| AT5G55970.1 zinc finger (C3HC4-type RING finger) family protein | 148 | 1e-009 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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