 |
Information for unigene UN48640
| FASTA Sequence |
| Unigene ID: UN48640 | Length: 897 |
SSR | | GGCTCTCTCGCTCTCTCGCTCTCACCTAACTCACTAAAGCAGCAGCTAGCTACAATGGCGGTTACCTTTTCAGATCTACACACAGA
GCTGGGTCTCAAATCCGTTGAGGAGCACCTCGTCGGAAAAACCTACATCTCCGGAGATAAATTGTCTGTAGATGATGTGAAGGTAT
ACGCTGCCGTTGTTGAGAAACCAAGCGAGAGTTTCCCTAATGCTAGCAAGTGGTACGCCTGTGTTGCCTCCCACCTTGCTAAAAGT
TTCCCTGGTAAAGCCGTAGGAGTTTCAATCGGTGGCTCTGCTGCTGCTCCTGCCCAAGCTGAGGCACCTGCAGTAGCTGCAGCTGA
TGATGATGATGACATGGATCTGTTTGGTGACGAGACCTAGGAGGAAAAGAAGGCTGCAGAGGAGAGGGAGGCTGCTAAGAAGGACA
CCAAGAAGCCCAAAGAGAGTGGAAAGTCCTCTGTGCTCATGGAAGTGAAACCATGGGATGACGAGACTGACATGAAGAAACTTGAG
GAGTGTGTTCGTGCTGTTGAGATGCCTGGTCTTCTATGGGGAGCTTCAAAACTGGTTCCAGTGGGTTACGGGATCAAGAAGCTCAC
GATCATGCTCACAATCGTTGATGACCTCGTCTCCCCAGACAACCTCATTGAAGACTACCTCACCTCTGAACCTAACAACGAGTACA
TCCAGAGTGTTGACATCGTCGCGTTCAACAAGATTTAGAGACTCTAAAACTTCTCTCCCTACCAAACGATACATTTTGATTTCCTT
CCGAGTTTTGTCTGCTTGAGATGTTTGTTTTCTAGTTGCAACTTGCACGACCCCTTTCATGTTTGCAAGAAACATAAACTATGGAT
GCTTAATATTCCTTTGCTAAAAACTGAAGTGTTGTGC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002873951 elongation factor 1B alpha-subunit 2 [Arabidopsis lyrata subsp. lyrata] | 1016 | 3e-108 |
| NP_568375 Elongation factor 1-beta 2 [Arabidopsis thaliana] | 983 | 2e-104 |
| NP_196772 Elongation factor 1-beta 1 [Arabidopsis thaliana] | 930 | 3e-098 |
| XP_002266279 PREDICTED: hypothetical protein [Vitis vinifera] | 862 | 2e-090 |
| AAO22799 putative elongation factor 1B alpha-subunit [Arabidopsis thaliana] | 854 | 2e-089 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SCX3 Elongation factor 1-beta 2 | 983 | 1e-105 |
| Q84WM9 Elongation factor 1-beta 1 | 930 | 1e-099 |
| P29545 Elongation factor 1-beta | 790 | 2e-083 |
| P29546 Elongation factor 1-beta | 715 | 1e-074 |
| P93447 Elongation factor 1-delta | 675 | 5e-070 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q29PY2 At5g12110 | 930 | 2e-098 |
| A9P7W8 Predicted protein | 845 | 1e-088 |
| B9GEM9 Predicted protein | 818 | 2e-085 |
| B6SIK8 Elongation factor 1-beta | 774 | 3e-080 |
| B6SLK4 Elongation factor 1-beta | 772 | 4e-080 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G19510.1 elongation factor 1B alpha-subunit 2 (eEF1Balpha2) | 984 | 7e-107 |
| AT5G12110.1 elongation factor 1B alpha-subunit 1 (eEF1Balpha1) | 931 | 9e-101 |
| AT2G18110.1 elongation factor 1-beta, putative / EF-1-beta, putative | 509 | 8e-052 |
| AT1G30230.2 elongation factor 1-beta / EF-1-beta | 504 | 3e-051 |
| AT1G30230.1 elongation factor 1-beta / EF-1-beta | 503 | 4e-051 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
