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Information for unigene UN48725

FASTA Sequence
Unigene ID: UN48725Length: 740 SSR 
GGACAATCCAAAACTCTCTCTCTCTCTTGTCTATTATCTCTACTTGTTATCATTTCTCACTCTAAAGGCGAGTCAATGGGTTTTCC
GGTGGGCTACTCCGAGCTCCTTCTCCCAAGAATCTTCCTTCATTTACTCTCTTTCTTAGGTCTGATCCGAAAACTAATCTCCACTA
TTTTCTGGCTCATTGGTTTACCCGATTTCCTAGAACCCGAACCGGTTTCATCTTCATGGCCCGAGCCACCACCAACCTCAAACCAC
CAAGACCCTCACTTGTTTTCAGCAGCGCTTCTAGCTGGAGATATCTTGCCCGTTGTCAGATTCTCCGATCTAAACCGACCCGAGTC
TGAATGTTGTGCAGTGTGTCTCTACGACTTCGAAAACGACGATGAGATCCGACGGCTGACGAATTGCAGGCATATATTCCATAAAG
GATGTTTGGACCGTTGGATGATGGATTATAATCAGATGACATGTCCACTGTGTCGTACACAGTTTATACCTGATGATCTTCAAGTG
GCGTTTAATCATAAGCTTTGGTCTGAATCTAGTGAAGTTTCTGAACTTCTTGTTGAATCATTTTAGGAGCTCTTTTCTCTCTCTTG
AAATTGTAATATAGTTTTTAGTATTTTGTTTGATGGATGTATATAAAAAAAGGTAGTGATTACAGGCTAGTTAAAAGACAAGACAA
ATTTGTATCATCTATTCACAAGAAAAAGAAATTGAAGTTTTGAATTAGTATC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_176569 RING/U-box domain-containing protein [Arabidopsis thaliana]7294e-075
XP_002886381 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]7223e-074
AAZ73370 At1g63840 [Arabidopsis thaliana]6174e-062
NP_198956 RING/U-box domain-containing protein [Arabidopsis thaliana]6068e-061
AAZ73388 At1g63840-like protein [Arabidopsis lyrata]6068e-061

Swiss-Prot top hits (Blast detail)Scoree value
Q9SUS4 RING-H2 zinc finger protein RHA1a2741e-023
Q9SUS5 E3 ubiquitin-protein ligase RHA1B2686e-023
Q940Q4 RING-H2 finger protein ATL4K1574e-010
Q8GW38 RING-H2 finger protein ATL1D1531e-009
Q9LY41 RING-H2 finger protein ATL3J1531e-009

TrEMBL top hits (Blast detail)Scoree value
Q9CAJ8 At1g63840/T12P18_147293e-075
Q3YIJ7 At1g63840 (Fragment)6173e-062
Q3YI75 At1g63840-like protein (Fragment)6065e-061
Q9FN60 Putative RING zinc finger protein6065e-061
Q8LDF8 RING zinc finger protein-like6022e-060

Arabidopsis top hits (Blast detail)Scoree value
AT1G63840.1 zinc finger (C3HC4-type RING finger) family protein7292e-077
AT5G41400.1 zinc finger (C3HC4-type RING finger) family protein6063e-063
AT3G61460.1 BRH1 (BRASSINOSTEROID-RESPONSIVE RING-H2); protein binding / zinc ion binding4192e-041
AT4G11370.1 RHA1A; protein binding / zinc ion binding2758e-025
AT4G11360.1 RHA1B; protein binding / zinc ion binding2685e-024

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
121  20%
 
91  20%
 
112  40%
 
201  20%

Unigene MembersMember information