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Information for unigene UN48781
| FASTA Sequence |
| Unigene ID: UN48781 | Length: 1108 |
SSR | | TTATCCCTATCTCTCTCTCCCACACTTCTTCCTCTGCAATGGCTTCATCAATAGTAACCTCAAGCTTCAAGCCTTTAGCCATGGCG
GACTCTTCCTCTTCCACCATCTTCTCCCATCCTTCACTCTCCACCATCTCTTCTCGCTGCTCCTTCCTCAGCGGACGTACTAACCT
CCCGCTCTCCTTCTCCCGCGTCTCCCTATCTCTCAAAGCCAAAACCAACCTAAAGAAGTCTCCTTTCGTCTCCTTCGTCGCTCAGA
CTTCGGATTGGGACGCGGAAGAAGGTGGGGACGTGAGCGCTTCCGTCGCCGTTGAGGAGAACGAGCCTGAGGCAACGTTCTCGGAG
GGAGATGTCGGCGAAGGAGGTGACTTCCCGGAGCCGCTGGAGGAAGCGAAACTCTTCGTCGGAAACTTGGCTTACGACGTTGACAG
TCAAGCCTTGGCTATGCTCTTTGAGCAAGCCGGTACTGTTGAAATCGCTGAGGTTATCTACAATAGGGAGACAGACCAGAGTCGTG
GGTTTGGATTTGTGACAATGAGTACCGTGGAAGAAGCTGAGACTGCTGTTGAGAAGTTCAACCGTTATGATTTGAACGGAAGGCTT
CTGACAGTAAACAAGGCAGCACCAAGAGGATCACGTCCAGAACGCCAGCCTCGGGTATATGAACCTGCGTTCAGAGTCTATGTGGG
GAACCTACCGTGGGATGTTGACAACGGTCGTCTAGAACAAGTTTTCAGTGAGCATGGCAAAGTTGTGGAAGCTCGTGTGGTTTATG
ACCGTGAGACGGGTCGCTCACGTGGGTTCGGTTTTGTCACAATGTCTAACGAGACTGAACTCAACGACGCTATCGCTGCTCTTGAT
GGACAGAACATGGAGGGTAGAGCAATCAGAGTGAACGTAGCGGAGGAGCGTCCGAGGCGTGGGTTTTAAAAGGATTGAGATTATCT
CTTTTGCCAGTTTCCTCTCTCTCTCTATCTATCGCTTTGCATTTTGTTTAGACGAGATTCTTACACTCTTCGATGATTTTTTTGTT
GTGTCTGAACACTCTTTGATGATTTTTTTTGTTGTCTGAACTAATGCTTATACTATAGCACATAACCGTCTTCAGT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002867645 RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata] | 1165 | 2e-125 |
| BAA06520 RNA-binding protein cp31 [Arabidopsis thaliana] | 1112 | 3e-119 |
| BAA06521 RNA-binding protein cp31 [Arabidopsis thaliana] | 1108 | 9e-119 |
| XP_002865780 hypothetical protein ARALYDRAFT_918033 [Arabidopsis lyrata subsp. lyrata] | 1028 | 2e-109 |
| NP_199836 chloroplast RNA-binding protein 31B [Arabidopsis thaliana] | 957 | 3e-101 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q04836 31 kDa ribonucleoprotein, chloroplastic | 940 | 1e-100 |
| P19682 28 kDa ribonucleoprotein, chloroplastic | 800 | 2e-084 |
| P19683 31 kDa ribonucleoprotein, chloroplastic | 794 | 1e-083 |
| P28644 28 kDa ribonucleoprotein, chloroplastic | 778 | 8e-082 |
| Q9ZUU4 Ribonucleoprotein At2g37220, chloroplastic | 520 | 6e-052 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FGS0 AT5g50250/K6A12_11 | 957 | 2e-101 |
| Q94EH5 AT4g24770/F22K18_30 | 936 | 6e-099 |
| Q39209 RNA binding protein (Fragment) | 929 | 4e-098 |
| B9RAR1 Ribonucleoprotein, chloroplast, putative | 856 | 1e-089 |
| B9I3I8 Predicted protein | 841 | 6e-088 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT5G50250.1 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative | 957 | 1e-103 |
| AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding | 941 | 8e-102 |
| AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 520 | 6e-053 |
| AT1G60000.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 389 | 9e-038 |
| AT3G53460.1 CP29; RNA binding / poly(U) binding | 266 | 2e-023 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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