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Information for unigene UN48834

FASTA Sequence
Unigene ID: UN48834Length: 1138 SSR 
GTTCCCTTTTCAATTCTGCTTCTTCCTCTTAAGCTTAATAGGGTTTCCTCATTCCCAGGCTCCATGACTTCCTGCGATTTCTCCCC
CTCTGCTTGATTCTCTCTCTCTCAGGTAGGTAACACACGAACTCTCTCTTTACTCTACCTCGATCCATCTATGTGCTCTCTCTATG
TATACAACTAGATCTCGTTTGCTTCTCCTGAACAAATCTAGTTTGCAAATCTAATTCGAATCTGCCTTGACTTGATTCGATTCAAA
GGTAACTGTACAAACCTCCTTCGTTGTTTATTGAGAACCTAATTGATTTGCAACTGTGAAGATTGAAGAAGAAGAAGAAGAAGAAG
AGATGAATGTGAGTCATGCATCGGTGCATCCGGTGGAAGATCCTCCTCCAGCTACAGCAGCCACACAACAACAAGTAGAGAATAAT
CATCCGCCACGTGTTAGGATGGATGATATAGAAGGCATGCCTGGCACTTTACTCGGCGTCGCTCTTCGTTTCTTCCAGTTCTTCTT
TGCTGCTGCTTCTCTTTCCGTCATGGCTTCTACTTCTGACTTCCCTTCCGTCACCGCCTTCTGCTACCTAGTTGCAGCCACTGGAC
TGCAGAGCTTGTGGAGTCTTGCACTAGCCGCCGTTGATGTCTATGCCATTATGGTCAAACGTTCGCTTCAGAACCGACGGCTTGTG
AGCGTGTTTGCAATTGGCGATGGGGTGACGTCGACCCTGACTTTTGCAGCGGCTTGTGCATCGGCGGGCATAACGGTGCTGATAGA
CAATGATCTGAATAGCTGCTCACAAAACCACTGTGTTCAGTTTGAAACATCAACAGCATTAGCCTTCATAAGCTGGTTTGCTGCTT
TGCCTTCTTTTCTCTTCAACTTCTGGTCTCTCGCATCCCGTTGATAAAAGACATACAATATGATGTTGCTGCTCCACGAGCATGCG
TTTCCACGGTGTGTTAAATGTGTGTAAGGGGGTTTTGGGTTTTTTCACGGTGTATAGTGACTGCTTTTTCTTCTTATTCGGGTTTG
GATCCAACATTCTTCTAAACCCATTACCAGGAAATTGGGAATTGTTGTTCGTTTTGTTAAACACTTCGGGATCTATGATTGAAAGG
AAAGTTCAGTTCTTGTAGCT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_565671 uncharacterized protein [Arabidopsis thaliana]8005e-083
XP_002880929 hypothetical protein ARALYDRAFT_481668 [Arabidopsis lyrata subsp. lyrata]7818e-081
XP_002529944 conserved hypothetical protein [Ricinus communis]7163e-073
ACU16925 unknown [Glycine max]6869e-070
ACU15997 unknown [Glycine max]6706e-068

Swiss-Prot top hits (Blast detail)Scoree value
Q9SKN3 UPF0497 membrane protein At2g283708316e-088
Q6NPF8 UPF0497 membrane protein At2g372005162e-051
Q8L7R5 UPF0497 membrane protein At3g232003602e-033
Q945M8 UPF0497 membrane protein At3g538503567e-033
Q9LZM5 UPF0497 membrane protein At5g020603342e-030

TrEMBL top hits (Blast detail)Scoree value
B9SVC5 Putative uncharacterized protein7162e-073
C6T5C3 Putative uncharacterized protein6866e-070
C6T2V9 Putative uncharacterized protein6704e-068
B9HQ90 Predicted protein6517e-066
B9MZ54 Predicted protein6203e-062

Arabidopsis top hits (Blast detail)Scoree value
AT2G28370.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: integral membrane protein, putative (TAIR:AT2G37200.1); Has 100 Blast hits to 100 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).8324e-089
AT2G37200.1 integral membrane protein, putative5171e-052
AT3G23200.1 unknown protein3602e-034
AT3G53850.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: integral membrane protein, putative (TAIR:AT5G02060.1); Has 100 Blast hits to 100 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).3566e-034
AT5G02060.1 integral membrane protein, putative3342e-031

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  67%
 
81  33%

Unigene MembersMember information