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Information for unigene UN48842
| FASTA Sequence |
| Unigene ID: UN48842 | Length: 1150 |
SSR | | GGAGACATACGTGGCGGATATCTAGAGAGACTAGAGAGAGAGAGAGAGAGAAGAAGGAGTTTCGTCGTTCGTCAATGGAGATCTCT
GCTGCGTCTGCTTCTCTAACTTCCTCTGGACTCGTTCCTCGACTTCTCCCTCCCTTGTTCTATCCTCCTCAAGCTCGAACTACTTC
CTGTGCACCATTTTCCTCTGCTAAACTCATTTCTCCTCCTCACAGACGTATACCTCCCTCTCCCTGTCTCGCCGATCAGTCTACCT
CCACCGGGGTCAATGTTGTTGATTCAGATCCCATCGATGCTGTTAAGAGGAAAGCTATGGACATATCCCCTCAACTCAAAGGAGCT
TCCATATTTCTGGTTGGGATTAATAACCACATTAAAACCGACTTGGGGAAGCTTTTGGCTGACTCTTTACGATATTACTACTTTGA
TAGTGATAAGTTGATCGCAGAGGCGGCTGGTGTAAATGCATCCGTTCAAGCTTTGAAGGAGGTTGATGAGATGGCTTTTAAGGAAT
CAGAGACTGAAGTGCTAAAGCAGCTATCATCTATGGGTCGGCTTGTAGTTTGCGCTGGAGATGGTGCAGTCCAGAGCTTGACTAAT
CTTGCACTTCTTAGACACGGGATCTCCATATGGATCGATGTTCCTCTACAAATCGCAGCTAAAGGAGATGATCCATTCAGTTCAGA
ACCTTCCCCTGAGTTGTATGACGCAGTAAAAGCGAGTTACGAAAAATCAAGAAAGGGTTACGATACAGCAGATGCAGTTATTTCCC
TTGAGAGAATAGCTACAAAGCTGGGACTTGAAGACTTGGAAACAGTAACTTTTGAGGAGATTGCTTTGGAGGTCTTGAAAGAAATA
GAGAAGTTGACGAGAGTGAAGAAAATGATGGAGGAAGCTTCTCGACCTTTTTAGGTTGATATTTTACTCACTCAATCACGCATCGC
AAAATCTGTGAATTTTTTTTAGGGTTTCTATCATGTTGTATATCATGAACATGTTATTTTCATCGTTATCACGGACATATATTAGG
CATTTTTTGCATAAAATGTTCGGCATTGGGTGGAGGAGAAACATGTAGCGTCTCTATCACGTGAGATCACGTGTAGGACTTATTCT
GTTGATGAGTCGATCCACCAGTACGTGGGCCT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_189325 shikimate kinase like 1 [Arabidopsis thaliana] | 1042 | 5e-111 |
| XP_002877000 shikimate kinase family protein [Arabidopsis lyrata subsp. lyrata] | 1035 | 3e-110 |
| XP_002328924 shikimate kinase [Populus trichocarpa] | 702 | 1e-071 |
| XP_002512880 protein with unknown function [Ricinus communis] | 672 | 4e-068 |
| XP_002273840 PREDICTED: hypothetical protein [Vitis vinifera] | 472 | 6e-045 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q00497 Shikimate kinase, chloroplastic | 302 | 1e-026 |
| Q9SJ05 Shikimate kinase, chloroplastic | 244 | 7e-020 |
| B0JFW8 Shikimate kinase | 229 | 4e-018 |
| Q31PU5 Shikimate kinase | 218 | 7e-017 |
| Q5N4D3 Shikimate kinase | 218 | 7e-017 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LW20 AT3G26900 protein | 1042 | 3e-111 |
| B9N0W2 Shikimate kinase | 702 | 8e-072 |
| B9RH21 Putative uncharacterized protein | 672 | 2e-068 |
| C6TEY0 Putative uncharacterized protein | 433 | 1e-040 |
| C6T2S3 Putative uncharacterized protein (Fragment) | 413 | 3e-038 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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