Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN48906

FASTA Sequence
Unigene ID: UN48906Length: 1031 SSR 
GGATAGGAAAAAAAGAAGAAAGAGGAAAACAACAAGTATCGTGCTTGATTGGGAATTAGGGATTCAGGGAGGCGAGAGAGAGAGAT
TCATTTCGATTTCTCTTCGAAAAATTAAATTAATCCAGAGGGGTTGGAGGTGGAGAGATGGTGAGGATGGTGAGAAGCTGCTTACA
GTCGATGATGAAGCTTGTGAATTCCCTTCTTGGAATGGTTGGTGTCGCCATGATCCTCTACGCTGTTTGGCTCGTCAGGCAATGGC
AACAACAAACCGGATCTCTCCCCTTCCCTTACCCTCATGATGATCACCCCCTTCCTTGGTTCATTTATGCTTTTCTTTGTCTCGGG
GCTCTTCTCTGTCTTGTCACTTGCGCTGGCCACATCGCTGCTGAAACCGTTAATTCTTGTTGTCTTTACTTTTATATGGGATTCAT
CCTCTTGCTTATTATGATTCAAGGTGGTGTCGTTGCCGATACCTTTCTTAACCCTGACTGGAAACAGGACTTTCCAGATGATCCAA
GTGGTGCCTTCATCCGTTTCTCTAAGTTCGTTGAGTCAAACTTCAAGATTTGCAGATGGATTGGTCTCTCCATTTTCTTTGTCCAG
GGTGCTTCAGTTCTATTGGCCATGTTGCTCAAAGCTCTTGGACCTCACCCGCATTATGACAGTGACGATGAATATGATTTGAGCAC
GGTTTCACTCCTACGTGATGCTCGCCAGCCTCATCGTCCATACGTTGTTGGAGAACCCATTTATGGACCCAAACCGGATTCCTGGA
CTGTTAGGATTAATGAAAGAGCCAACCGGTAAGAGATGGAGACCAAGAGAAAGCTGTGAGAAACAAAGTAGCCAATAGTCACCTCC
TTTAGTATATATTACTTACTTTGCTTCTTTGTTGCACCTATCTATCTATCTCTCACTCCAAAGTCCAACAAAACCACTATGTCTTG
TAAAAAAAATATTGCATACACACATATGGGGATGTACTTGTGCATTTTAAAAACTACAATATATATGATCACTTCAAACCCCCTC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002884219 hypothetical protein ARALYDRAFT_480909 [Arabidopsis lyrata subsp. lyrata]9205e-097
NP_179667 Tetraspanin family protein [Arabidopsis thaliana]8954e-094
XP_002517938 conserved hypothetical protein [Ricinus communis]7162e-073
NP_973493 Tetraspanin family protein [Arabidopsis thaliana]7119e-073
XP_002319358 predicted protein [Populus trichocarpa]6949e-071

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q940P5 At2g20740/F5H14.298953e-094
B9RW19 Putative uncharacterized protein7162e-073
Q3E7P8 Putative uncharacterized protein At2g20740.27116e-073
B9I5J1 Predicted protein6946e-071
B9N2B9 Predicted protein (Fragment)6921e-070

Arabidopsis top hits (Blast detail)Scoree value
AT2G20740.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20230.1); Has 91 Blast hits to 91 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).9041e-097
AT2G20740.2 unknown protein7123e-075
AT2G20740.3 unknown protein5044e-051
AT2G20230.1 LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28770.1); Has 91 Blast hits to 91 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).3046e-028
AT4G28770.1 FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20230.1); Has 94 Blast hits to 94 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).2921e-026

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
71  50%
 
91  50%

Unigene MembersMember information