 |
Information for unigene UN48966
| FASTA Sequence |
| Unigene ID: UN48966 | Length: 1211 |
SSR | | GGAAGTTGAAAACAAGTTGTTTGACTTGTTCTGTCCTCTTTGGTATTCATTTCATGTGCCGTCTTTGATTTCTCTTACGCCGACGA
TACAACGACGCCGTTCCGTTACCGATCAGTAGTAAGTTGTGTAGTGTTTCCTCACTGTGTCGATCGATTGAGATAATTAATCTTCG
GCCATGTCGTGGTCGAAGGCATGTAGAGGGACTCGAATCTCTTCATATTTAGAGAATCTTCATCGGACATCATCGAGGACTGTGCC
TCTTGTGCCTAGCTCTCGTTATTACACTCATGGAGCTTGTAATGGCAATCAGCATAATCTCCGAAACAAGAGAGGGCTTTTGGGAA
GCTCATCTTCGTTTTTCACTTTGAATTCTCATTCTGCTGCTGCTGCTGCTGCTGCTAAATCGATGTTGCTTAGTACTGCTCATCGC
CACTATTCTTCTACTCAGTCGATAACAGAAACCAAATCGAAGAAAATGCTCTATTACCTCACTGCTGTCGTCTTTGGCATGGTTGG
GCTAACTTACGCCGCTGTGCCGTTGTATAGAACCTTCTGCCAAGCTACTGGATATGGGGGTACTGTTCAACGCAAAGAGACTGTTG
AGGAGAAGATTGCTAGGCATTCAGAATCTGGTACCGTCACTGAAAGGGAGATTGTGGTGCAGTTCAATGCTGATGTTGCTGATGGG
ATGCAGTGGAAGTTCACTCCTACTCAAAGAGAGGTGAGAGTAAAGCCAGGAGAAAGCGCGCTCGCCTTTTACACTGCTGAAAACAA
AAGTTCAGCTCCAATAACCGGAGTCTCCGCTTACAATGTCACTCCCATGAAGGCAGGAGTTTATTTCAACAAGATACAATGTTTTT
GCTTTGAGGAGCAGCGACTTCTTCCCGGAGAACAGATCGACATGCCGGTGTTCTTCTACATTGATCCTGAGTTTGAGACTGATTCA
AGAATGGACGGAATCAACAACCTGATATTGTCTTACACTTTCTTCAAAGTGTCCGAGGAAAATACTACAGATTCGGTCGACAAGAA
CAGCTCTGTGCCAGTTCAAGAAAGCAAGTAAAATGTGTCATTTTTTCTAAAGAGAAACTCTCTCTAATCTTTGTCGAATTTTATGA
AGGCATCTGTGTTATGCAATTGTCTGTTAGTTATGTGCTTTATATCTTAAGAAACATAAAATTATTTATAAGCACAAAGAGCTTAA
TAACTTG
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002889401 cytochrome c oxidase assembly protein CtaG [Arabidopsis lyrata subsp. lyrata] | 1221 | 9e-132 |
| NP_171743 cytochrome c oxidase assembly protein CtaG / Cox11 [Arabidopsis thaliana] | 1204 | 8e-130 |
| AAG00893 Similar to cytochrome-c oxidase assembly protein [Arabidopsis thaliana] | 1028 | 2e-109 |
| XP_002297920 predicted protein [Populus trichocarpa] | 827 | 4e-086 |
| XP_002277478 PREDICTED: hypothetical protein [Vitis vinifera] | 802 | 3e-083 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| A3KMZ6 Cytochrome c oxidase assembly protein COX11, mitochondrial | 504 | 5e-050 |
| Q6P8I6 Cytochrome c oxidase assembly protein COX11, mitochondrial | 500 | 1e-049 |
| Q9Y6N1 Cytochrome c oxidase assembly protein COX11, mitochondrial | 496 | 4e-049 |
| O21243 Cytochrome c oxidase assembly protein ctaG | 491 | 2e-048 |
| Q9UTM2 Rsm22-cox11 tandem protein 1, mitochondrial | 472 | 3e-046 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8GWR0 At1g02410 | 1204 | 5e-130 |
| Q9FZ20 T6A9.10 protein | 1028 | 1e-109 |
| B9GK24 Predicted protein (Fragment) | 827 | 3e-086 |
| B6T5S8 Cytochrome c oxidase assembly protein ctaG | 785 | 2e-081 |
| A2XLF5 Putative uncharacterized protein | 783 | 4e-081 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G02410.1 cytochrome c oxidase assembly protein CtaG / Cox11 family | 1252 | 8e-138 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
