 |
Information for unigene UN49070
| FASTA Sequence |
| Unigene ID: UN49070 | Length: 1150 |
SSR | | GGAAAGACGCTTCCAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCGTCTCCCTAAAACCCTAGAGAGTTGATACGCAACACCACAT
GGCTTTCTTAAGTAAAGTTGGAAAGATATTTAGGCAGACCAGCACCCATGTCGCTGCCTCTAACTCAATGCTACAGGGCATCCGTT
GCATGTCTTCGTCCAAAATCTTTGTTGGAGGTATCTCCTACAGCACTGATGAGTTTGGCTTAAGAGAAGCTTTTAGCAAATATGGA
GAAGTTGTTGATGCGAAAATCATTGTGGACCGTGAAACTGGGAGATCAAGGGGATTTGCTTTTGTCACATTTACTTCTACAGAAGA
GGCTAGTAACGCCATGCAATTGGATGGACAGGACCTTCATGGTCGAAGAATTAGGGTGAACTACGCAACTGAAAGAGGAAGTGGAT
TTGGAGGAAGAGGATTCGGTGGTCCTGGTGGTGGCAATGCGGGTGGTTACGGTGCTCCATCTGGTGGTTATGGAGGTGGTGGTGGT
TACGGAGGCGGTGCTGGTAGTTACGGAGCTCCAGCTGGTGGTTACGGAGGTGGCTCATCTTATGGTGGAAATGCTGGTGGTGGTTA
TGGAGGTAACTCTCCTTATGGTGGCAATTCCGTTGGGGATGGTTATGGAAGCAACGTTGGCGGTGGATATGGTGTCGCTGGTGGTG
TTGGTGGAAGTGACAACTTTGCTCAAGGCAGTTCCTCTAATGCTGGATTTGATGACAAGTTTAGCAGCAACGAACCACTAGGCAAC
GATACGGATCATCAGCTTGAAAGCGCTAGCGATGAGCAGTTTGGTGGCAGTGACAATCAGTTTGGTGGCTCAGAGAACGGTCAAAC
AGAGATTGCCCCAGACGGGTTTGATCAGCCTGACGATAGCGATGTTGCGAAAAGAGCTTAGTCTCTACAATATTGCACTGCCTGCG
TTACTCTTTGCAGTTTCAGAATAAACTTGTGGAAGTTTCTTAGTTTCTGTTTTTCAACGTTTGGTGTTGTTTATTATCATATGCAG
AGACCTCTCTATTGTTGGTCGTTTTCTTTACGTTTTGTGACATCTGAGGCTCGCAAATAAAACTGTAATAACTTCTAACAGACTTT
CCTTTTTGTTCTATTTAAGGGTTCTATACTGG
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002887532 hypothetical protein ARALYDRAFT_476560 [Arabidopsis lyrata subsp. lyrata] | 1203 | 1e-129 |
| NP_177563 glycine-rich RNA-binding protein 5 [Arabidopsis thaliana] | 1187 | 7e-128 |
| ABB97027 unknown [Brassica rapa] | 816 | 7e-085 |
| NP_200911 glycine-rich RNA-binding protein 3 [Arabidopsis thaliana] | 689 | 4e-070 |
| XP_002284026 PREDICTED: hypothetical protein [Vitis vinifera] | 655 | 3e-066 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q03250 Glycine-rich RNA-binding protein 7 | 408 | 6e-039 |
| Q03251 Glycine-rich RNA-binding protein 8 | 392 | 5e-037 |
| P10979 Glycine-rich RNA-binding, abscisic acid-inducible protein | 386 | 2e-036 |
| P21522 Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog | 333 | 3e-030 |
| Q13151 Heterogeneous nuclear ribonucleoprotein A0 | 299 | 3e-026 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9C909 At1g74230 | 1187 | 5e-128 |
| Q2V614 Putative uncharacterized protein | 816 | 5e-085 |
| Q9FNR1 AT5g61030/maf19_30 | 689 | 3e-070 |
| A5B074 Putative uncharacterized protein | 639 | 2e-064 |
| B9RLN6 Glycine-rich RNA-binding protein, putative | 591 | 6e-059 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G74230.1 GR-RBP5 (glycine-rich RNA-binding protein 5); ATP binding / RNA binding | 1188 | 2e-130 |
| AT5G61030.1 GR-RBP3 (glycine-rich RNA-binding protein 3); ATP binding / RNA binding | 689 | 1e-072 |
| AT2G21660.1 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding | 408 | 6e-040 |
| AT4G39260.1 GR-RBP8; RNA binding / nucleic acid binding / nucleotide binding | 392 | 4e-038 |
| AT1G18630.1 GR-RBP6 (glycine-rich RNA-binding protein 6); RNA binding / nucleic acid binding / nucleotide binding | 338 | 7e-032 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
