RadishBase

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Information for unigene UN49097

FASTA Sequence

Unigene ID: UN49097	Length: 620	SSR
GGCTCGGAGAAATCACGGAGGATGAGCTCAAGCAGTACGACGGCTCCGATTCCGAAAAGCCCCTCCTCATGGCGATCAAACGCCAG ATCTACGACGTTTCCCAGAGCAGGGTGTTCTATGGACCAGGTGGACCATATGCTTTGTTTGCGGGGAAAGATGCGAGCCGAGCTTT GGCGAAGATGTCCTTTGAGGAGAATGATTTGACCGGAGACATCTCGGGTCTCGGTCCTTTTGAGCTAGATGCGTTGCAAGACTGGG AATACAAGTTCATGAGCAAGTATGTCAAAGTCGGGACCATTCTGAAGAAGGATGGACAAGGCGAAGAAAGTACAGAAGAACCTTCT ACCAACACTACTGGATAAGAAGCTTCCATTGGCGGCGAAACTTCTACAAGCGTAGAGGAGCGAACTGCAGAAACCATCGAGAAGAA GGATGTCGCAAATGGCGATGCTGCAAAGGAAGATTAGTGAGAGACTTTTAAGGGGTTTTAAGTTATATATATATATGTAGCTCAAT GTGGAAGAAGGAAGCTCAATAGATTAAAAAAATGTAGACTGTGTGTACCTTTTGGATCTTATATTTGACATCTAATTCTGGTTATA AATTGTTTCTGTTTTTAG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_190458 membrane steroid-binding protein 2 [Arabidopsis thaliana]	529	4e-052
AAD34615 putative progesterone-binding protein homolog [Arabidopsis thaliana]	526	1e-051
XP_002875931 membrane-associated progesterone binding protein 3 [Arabidopsis lyrata subsp. lyrata]	516	1e-050
XP_002464419 hypothetical protein SORBIDRAFT_01g017840 [Sorghum bicolor]	502	6e-049
ACJ85430 unknown [Medicago truncatula]	496	3e-048

Swiss-Prot top hits (Blast detail)	Score	e value
Q9M2Z4 Membrane steroid-binding protein 2	529	2e-053
Q9XFM6 Membrane steroid-binding protein 1	481	8e-048
Q9SK39 Probable steroid-binding protein 3	263	2e-022
Q6IUR5 Neudesin	223	7e-018
O15173 Membrane-associated progesterone receptor component 2	223	7e-018

TrEMBL top hits (Blast detail)	Score	e value
C5WWE9 Putative uncharacterized protein Sb01g017840	502	4e-049
B7FKZ6 Putative uncharacterized protein	496	2e-048
B6TD62 Membrane steroid-binding protein 1	491	8e-048
A2Z932 Putative uncharacterized protein	489	1e-047
A3C684 Putative uncharacterized protein	489	1e-047

Arabidopsis top hits (Blast detail)	Score	e value
AT3G48890.1 ATMP2; heme binding	529	2e-054
AT5G52240.1 MSBP1 (membrane steroid binding protein 1); steroid binding	481	8e-049
AT2G24940.1 AtMAPR2 (Arabidopsis thaliana membrane-associated progesterone binding protein 2); heme binding	263	1e-023
AT4G14965.1 AtMAPR4 (Arabidopsis thaliana membrane-associated progesterone binding protein 4); heme binding	190	4e-015

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	2			100%

Unigene Members	Member information