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Information for unigene UN49105
| FASTA Sequence |
| Unigene ID: UN49105 | Length: 1078 |
SSR | | GGAGAGTATTCTTCTTCAGGGCTCAAATCGAAGAGCGAGCGATAGAGTGAAATTGATCAGTAAGCTATGGACAGAGAATGGGGATC
GAAGCCAGGAGGCGGAGGCGCCGCCTCGAGCCAGAACGAGGCCATAGATCGCCGTGAGCGTCTCCGTCGTCTCGCTCTCGAAACCA
TAGACATAGCGAAAGATCCCTATTTCATGCGAAACCATCTCGGAAGCTATGAGTGCAAACTGTGTCTAACGCTGCACAACAACGAA
GGAAACTACTTGGCGCATACACAAGGTAAGAGGCATCAGACCAACTTGGCTAAGAGAGCTGCTCGTGAGGCATCAGAAGCTCCTAC
TCAGCCTCAGCCTCACAAGCGCACTGTCTCTGTTCGCAGAACGGTGAAAATCGGTAGACCAGGTTACCGCGTTACAAAGCAGTACG
ACCCTGAGCTGAAGCAAAGATCTCTTCTGTTCCAGATTGAGTATCCTGAAATAGAGGACAACATAAGGCCTAAACATCGTGTCATG
TCTTCATTCGAGCAGAAAGTTCAACCTTACGACAAGAAATACCAGTATCTTCTGTTTGCAGCTGAACCATATGAAACCATAGCCTT
CAAGGTTCCAAGCACAGAAATAGACAAGTCAACCCCAAAGTTTTTCTCTCACTGGGATCCAGACTCAAAGATGTTTACTTTGCAGG
TGTATTTCAAGCCGAACAAACCAGAACCATTCAAGCCTCAGTCCACTATTGAATCAAATGGCCTTCTGCCACCACCACCACCACCG
CCTCAAGCTCAACCGCCACCACCTCCTCCATCTGGTTCACTTCCACCACCACCACCCCCGATGATGACTAATGGTAGTGGGGCCTA
CCCACCACCTCCGCCACCACCTTCTGGAGGTTACATGTGAAAGTGAAACTAGGATATGCTAGAATCAAACTACAAACCGTTTGAAC
ACAGTAGTCTTTTTCACTGTTTATCCCAAGAGAGTGTACTAAAATATCAAAATCTGTTATGACATGGATCTTTGAAGCTGATTTCT
GCAGATGTATTAGCTATCCTGGGCGTATGTTGAAGTTCTCTGTTAT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002881233 hydroxyproline-rich glycoprotein family protein [Arabidopsis lyrata subsp. lyrata] | 1294 | 2e-140 |
| NP_565747 splicing factor 3A subunit 2 [Arabidopsis thaliana] | 1292 | 4e-140 |
| XP_002323495 predicted protein [Populus trichocarpa] | 1185 | 1e-127 |
| XP_002519451 Splicing factor 3A subunit, putative [Ricinus communis] | 1169 | 8e-126 |
| XP_002266748 PREDICTED: hypothetical protein [Vitis vinifera] | 1151 | 9e-124 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| A5PJN8 Splicing factor 3A subunit 2 | 884 | 4e-094 |
| Q15428 Splicing factor 3A subunit 2 | 883 | 5e-094 |
| Q6AXT8 Splicing factor 3A subunit 2 | 880 | 1e-093 |
| Q62203 Splicing factor 3A subunit 2 | 813 | 6e-086 |
| Q54B65 Splicing factor 3A subunit 2 | 663 | 2e-068 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O80897 At2g32600/T26B15.16 | 1292 | 3e-140 |
| B9IFT9 Predicted protein | 1185 | 7e-128 |
| B9S0D2 Splicing factor 3A subunit, putative | 1169 | 5e-126 |
| A9NV96 Putative uncharacterized protein | 1101 | 4e-118 |
| A9NVY1 Putative uncharacterized protein | 1093 | 3e-117 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G32600.1 hydroxyproline-rich glycoprotein family protein | 1292 | 2e-142 |
| AT1G61080.1 proline-rich family protein | 169 | 3e-012 |
| AT4G13340.1 leucine-rich repeat family protein / extensin family protein | 158 | 5e-011 |
| AT3G22800.1 leucine-rich repeat family protein / extensin family protein | 155 | 1e-010 |
| AT1G59910.1 formin homology 2 domain-containing protein / FH2 domain-containing protein | 151 | 3e-010 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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