RadishBase

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Information for unigene UN49128

FASTA Sequence

Unigene ID: UN49128	Length: 1168	SSR
TTTTACACATTGAACCTAAAACTATTATAAAACAAAGACCCTAATTAGTAGTAATTACCCCTAATTTCTCTTTACCCCAAAAGGTT TAAAAACTCCTTCTAAACAAAACCAAACATCGGTTTAGACACTTAAACCCGCCTCAACCGGTCCTTACACGAGCTCGGATACACAA TCACAGAATCCACACACAACCCTCCTTTGGTATGTGTACAATCGATCTGCGTCATGGAGAACTTAAGCTTAGTCATCGACGAGCCT TTAGATTTTCCAACCACAAAGTCTCCAGCATGGTAGTGATTCCAGCTTCCCGATCCGGTCGACATGCATTGAGATGAAGAGTGCTG ACCATCTTCAGTCCAAATCTGAAACCGAACCGGTTTAATGTTCCAACCGTGAATCTGCTCAGTGTTGCAAACCTTCCAACCAAACC GCTTTCCCGGTTTGCCTAGGTGAAGCCTGAAGAAGACGCTGTAGGTTCCAGCTGGGAACGGGAAATCGATTTCTCCATCGACTTGA AACCACCAGATTTGCTGCAGATATGCCACCGAACCAAATCGAGATTCATCAGAGGGAACGTGATTCCAGTATCTCCGATCATCAAT TCCGGTGATCGACAATCCCTTGGCCGATATGTATAAACAGAGATCACTGGTTCGTTTATCCACCCAAGCTTTCTTTGTGCTTTGGT CGAAGGAATTAACACGAGAGAGGAAGTTGTAGACGTCTCTTTTGCGCAGCTTTTCCGGGAAACCCCCGAGGATTTTCTCGAGAATC AACCTGTAGTCTTGAGGAAGCTTCGACTCCCAGACGAAATCGGCCCAGGAAGCGCTGTGGAAAGCTCTGTTTAGCTTCGAGAATCT GCAGATCTCGACCGGATCCAAGCTCTCGAGGATCAACGCCACGCAGCTCTCGGGCAAATCACCCAAACCGGGCTTTGACAGATCTC TCTCACGAGAGGAAGAAGAAGATGAACCATTGGTGAAGAGAGAGAACCCAGAACCCATTCAATCAAAAAAATCGTAAGATGTTTCG AGACTTTCGTTGTGGGTTTTCTACTTTTGTTTTTAGAAAGTAAATCAAATCAAAACAGATGGAGAGAGAGAGAGAGAGAGAGAGAG AGGAAGAGTTTGGTGGTTTCAGACAAATGGTGCAAGCGAAGCTGACGCCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002886433 phloem protein 2-A11 [Arabidopsis lyrata subsp. lyrata]	1305	1e-141
NP_176497 F-box protein PP2-A11 [Arabidopsis thaliana]	1289	1e-139
NP_172731 F-box protein PP2-A12 [Arabidopsis thaliana]	1191	2e-128
XP_002892710 phloem protein 2-A12 [Arabidopsis lyrata subsp. lyrata]	1178	8e-127
XP_002298062 f-box family protein [Populus trichocarpa]	1022	1e-108

Swiss-Prot top hits (Blast detail)	Score	e value
Q9CAN4 F-box protein PP2-A11	1292	2e-141
Q9LN77 F-box protein PP2-A12	1191	1e-129
Q9LEX0 F-box protein PP2-A13	851	3e-090
Q9FJ80 F-box protein PP2-A14	718	7e-075
Q9LF92 F-box protein PP2-A15	587	1e-059

TrEMBL top hits (Blast detail)	Score	e value
B9GKN4 F-box family protein	1022	7e-109
B9GW68 F-box family protein	1013	7e-108
B9RC28 ATPP2-A13, putative	1003	1e-106
B9IC61 F-box family protein	904	3e-095
B9ID33 F-box family protein	896	3e-094

Arabidopsis top hits (Blast detail)	Score	e value
AT1G63090.1 AtPP2-A11 (Phloem protein 2-A11); carbohydrate binding	1293	1e-142
AT1G12710.1 AtPP2-A12 (Phloem protein 2-A12); carbohydrate binding	1191	9e-131
AT3G61060.1 AtPP2-A13 (Arabidopsis thaliana phloem protein 2-A13); carbohydrate binding	851	2e-091
AT3G61060.2 AtPP2-A13 (Arabidopsis thaliana phloem protein 2-A13); carbohydrate binding	839	6e-090
AT5G52120.1 AtPP2-A14 (Phloem protein 2-A14); carbohydrate binding	718	7e-076

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	1			50%


10	1			50%

Unigene Members	Member information