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Information for unigene UN49172
| FASTA Sequence |
| Unigene ID: UN49172 | Length: 1068 |
SSR | | GGGGAAAAACCTGACACTACCACAAAATCACGACCATTCTCTTCTGCTCTTTAACATGGAGACTCTTCTATCTCCTCGTTCTCTCT
CCCCTCCTCTCTCAAAACCCATTTCGAATTCCTCGTCTTTCTCCAGACCCATCTCTTACCAATCTGCCAAGTTCGCTAAACCGGAA
TCTCCACCTCCCACAAGCTTGTTAACCGATGCCAAACAAGCATGTGCAGTTGGGAAGAGGAGGAGGAGCATGATGATGGGTGGACT
GCTCATGTCTGGTTTAACAATGCTTTCAGAAGCCAATCTTCCAACACCAGCATTCGCTTTGACTCCAGTATTCAGAGAGTACATTG
ATACATTCGACGGATACTCTTTCAAGTACCCTCAGAACTGGATCCAAGTCCGAGGAGCTGGCGCTGACATCTTCTTCAGAGACCCT
ATCGTCCTCGACGAGAACCTCTCTGTCGAGTTCTCTTCGCCTTCTTCCTCCAAATACAAGTCGCTCGAGGACTTGGGATCACCTGA
AGAAGCAGGGAAGAAAGTACTCAGACAGTACTTGACTGAGTTTATGTCCACTAGACTCGGTGTCAAGCGGGAGTCCAACATCCTTA
CAACTTCCTCCAGAGTTGCAGATGATGGTAAACTCTACTACCAAGTCGAGGTGAATATAAAGTCATACGCAAACAACAACGAGCTG
GCAGTGATGCCGCAAGATAGAGTGGCGCGTTTGGAATGGGACAGGCGCTACCTGGCGGTTCTAGGAGTTGAGAACAATAGACTCTA
CTCACTGAGACTCCAAACTCCTGAGAAAGTTTTCCTGGAAGAGGAGAAAGATCTAAGAAGAGTCATGGAATCCTTCAGGGTCGAGA
AGATTTAGAGAGAGAGAGAAGCTCACGTTTCTTTTTCTTAAAAGAAAAAGAAAAAGATTGTTCTTCATACCCATTGTATTATTATT
TTTGGTAATATTGAAAGGCTTTAAGCTAAGCCAAAGGCTAAAGGCAGTTGTTGTAATGCCTTGTCTACAATTTTTGATTCATCATG
TTCACTACAAAACCGGTTAATTCTGAATGATTTCTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_567468 PsbP domain-containing protein 1 [Arabidopsis thaliana] | 1064 | 1e-113 |
| XP_002870234 photosystem II reaction center PsbP family protein [Arabidopsis lyrata subsp. lyrata] | 1062 | 2e-113 |
| AAM61572 unknown [Arabidopsis thaliana] | 1061 | 3e-113 |
| NP_001031646 PsbP domain-containing protein 1 [Arabidopsis thaliana] | 939 | 4e-099 |
| XP_002512537 Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis] | 838 | 2e-087 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O23403 PsbP domain-containing protein 1, chloroplastic | 1064 | 5e-115 |
| TrEMBL top hits (Blast detail) | Score | e value |
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| B9RFL8 Thylakoid lumenal 21.5 kDa protein, chloroplast, putative | 838 | 1e-087 |
| B9N469 Predicted protein (Fragment) | 836 | 2e-087 |
| A9PDI9 Predicted protein | 825 | 4e-086 |
| B6SS34 Putative uncharacterized protein | 773 | 4e-080 |
| B8A2C8 Putative uncharacterized protein | 773 | 4e-080 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G15510.1 photosystem II reaction center PsbP family protein | 1065 | 3e-116 |
| AT4G15510.3 photosystem II reaction center PsbP family protein | 940 | 1e-101 |
| AT4G15510.2 photosystem II reaction center PsbP family protein | 728 | 4e-077 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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