RadishBase

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Information for unigene UN49191

FASTA Sequence

Unigene ID: UN49191	Length: 1302	SSR
GGACCGACGTGTGTGTCCGAGATTCACTTCCTCTCTCATCCTCCTCTGATCCCGCCGCCACCAAACACCTCCTAGCTCTCCTCCTA TAGCTGTTAACTGTTATAGAGCCCGGTAACAAGCAGCTGAGGAATAAGAAGACGTCCTGATGATGATGATGACTTCACTCGGTATG GATGGTGGAGGAGGAGGGAGATTTATGACGTATCCGCCGCCTCTTTCCGTGCCTCCGTCGGCTCCTCAGTCACCAAACTTCTCTGG TGGTCTCCGATCACAACCTTCTTCTTTCCTCGTTGAGCAAGAAAAGTATCTTTCTGAATTACTTGCAGAGCGCCACAAGCTTACTC CCTTCTTGCCTGTGCTCCCACATCTCTTCCGTCTGATGAACCAAGAGATCTCTTTCATCATCTCCAGCACCAAATTGGCTAAACTC TCCTGGTAACTCGTCCGGTCTCATTGTAAAACGATCAATCAGGGTGGATATTCCAGTCGACAAGTATCCAAACTACAATTTCGTTG GCCGTCTCTTGGGACCTAGAGGAAACTCCCTAAAACGAGTTGAAGCGAGCTCTGAATGCCGTGTTCTGATCAGGGGGAGAGGCAGC ATTAAAGACCCAGTCAAGGAGGAAATGATGAGAGGGAAACCAGGGTATGAGCACCTGAATGAACAGCTCCACATCTTAGTGGAGGC AGAGTTGCCCATTGAGATAGTGGATGCACGTCTCATGCAAGCTCGTGAAATCCTAGCCGATCTACTTACTCCAGTGGAGGAGACGC ATGATTTCTACAAGAAACAACAGCTAAGGGAACTGGCGCTTCTCAACGGTAGTCTTAGAGAAGAAGGTTCTCCATCTCCAATGTCT GGTTCCGTCTCTCCTTACAATAATAGCCTCGGAGGCATGAAGAGAGCCAAGACAAGGGACTAAACAAAACAAAACTCATCTCACCC TTTTTCAACAAAGGTATAATTATATATTGCAACGTAACCACACTTCCCTTCTTCAAACAAGAAGGCTTTTGAAGGTTCCATCTCCA TCCCCATCCCCATCCTACTCCTACCTGGCTGCTACCGGTACCCTTCATATATGAGTCTGTGTCTGTTTATTTATGTGTCCCGGAGA GAGTTCAGATGACAGAACTACAGGAGTCTGTATCTTTGTGTATCTGTCTCTATCCGAGGTTTAGTTTTGGCTTTGCTTTTGTTCTT TTGGTTCAGTGGAGACTAGTGATAAGCTTTGTTGCTTAATTTTTGGGTAAAAACATATAGTGGTTTGTGTTTTGGTAATGAATTAT TCTGTTTGCATT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
AAM14070 unknown protein [Arabidopsis thaliana]	794	3e-082
CAA18222 putative protein [Arabidopsis thaliana]	794	3e-082
NP_194378 RNA-binding KH domain-containing protein [Arabidopsis thaliana]	794	3e-082
XP_002867563 KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]	791	7e-082
NP_200425 RNA-binding KH domain-containing protein [Arabidopsis thaliana]	769	2e-079

Swiss-Prot top hits (Blast detail)	Score	e value
Q0WLR1 KH domain-containing protein At4g26475	794	1e-083
Q9FKT4 KH domain-containing protein At5g56140	769	1e-080
Q8GYR4 KH domain-containing protein At3g08620	554	9e-056
Q9ZVI3 KH domain-containing protein At2g38610	552	2e-055
Q8GWR3 KH domain-containing protein At1g09660	518	1e-051

TrEMBL top hits (Blast detail)	Score	e value
B9GHJ4 Predicted protein	728	1e-074
A9PGC0 Putative uncharacterized protein	726	2e-074
B9N5K8 Predicted protein	726	2e-074
B9T3W9 Nucleic acid binding protein, putative	712	7e-073
C5XZS7 Putative uncharacterized protein Sb04g029520	673	2e-068

Arabidopsis top hits (Blast detail)	Score	e value
AT4G26480.1 KH domain-containing protein	799	3e-085
AT5G56140.1 KH domain-containing protein	774	2e-082
AT3G08620.1 KH domain-containing protein	558	3e-057
AT2G38610.1 KH domain-containing protein	552	1e-056
AT2G38610.2 KH domain-containing protein	552	1e-056

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	2			100%

Unigene Members	Member information