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Information for unigene UN49234

FASTA Sequence
Unigene ID: UN49234Length: 872 SSR 
CAAGCAGTTCACTTTGTCAGCGATCTCACCACCGGTCTCCTTAATCCCATCTCTGATAAACCCTCCTCCTCTCCTCCTCCTCCGGA
TGATGAGGGAGATGAGTCCAAGAGAGATCAACTAGAAGAGTCCATCACTGAGAAAGATTTGGTTGACGAGCCTGACACTTCTTCCT
TCTCTGCTTTCCTTGGTTCCCTCTTATCCTCAGACCCCAACAACAAACAAACCAACCACGATCAGGATCAGGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAGGCTGAATCAAGCGATACATCATCATCATCGTCCTCATCCTCTGGAACAATGAAAGAAACTACTAGTGTTAC
TACTGGTGGTGCAAAGAAGAGCTTGTTCTCCAAGTATAAACAGCATTTTAAGAACTTTTACCACGCTGTTAAGCTCTCCTCCAAGG
ATCGAAAGGCAAACTTCCCTGAGGTTGTTAATAAAACGGATGATGATAAAGAAGAGACTAAAGGATATGATGATGGCTTGGAGATG
AAGCAGTTGCAGAAGAACAAAGAGGAAGCTGCAAAGATAGGACAACAAGCAATTGTTATACCTGAAATTTCAGAGCCTTCTTTGCT
TTTAACGGACCAGTCTAGACGTTCCCTTTATTCTTCCCTTCCTGCTCTTGTTCAAGGCAGGAAATGGATTTTGCTTTACAGTACAT
GGAGGCATGGTATATCACTGTCAACGCTGTACAGGAAAAGCCTCCTCTGGCCTGGTCTCAGTTTACTGGTTGTTGGAGATAGGAAA
GGTTCGGTTTTTGGTGGACTTGTGGAGGCACCTTTGATACCAACTGATAAGAAGTATCAGGGAACCAACAGTACGTTTGTTTTCAC
TGATAAGTCTGG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_195697 TLD-domain containing nucleolar protein [Arabidopsis thaliana]10056e-107
AAL38841 unknown protein [Arabidopsis thaliana]10056e-107
XP_002866890 hypothetical protein ARALYDRAFT_490773 [Arabidopsis lyrata subsp. lyrata]9832e-104
XP_002310564 predicted protein [Populus trichocarpa]4869e-047
XP_002531255 conserved hypothetical protein [Ricinus communis]4869e-047

Swiss-Prot top hits (Blast detail)Scoree value
Q8N573 Oxidation resistance protein 11674e-011
B4F6Q9 Oxidation resistance protein 11665e-011
Q8NI08 Nuclear receptor coactivator 71656e-011
A8KBE0 Oxidation resistance protein 11648e-011
Q5ZMS4 Nuclear receptor coactivator 71631e-010

TrEMBL top hits (Blast detail)Scoree value
Q8GUN9 Putative uncharacterized protein At4g3987010054e-107
Q8VZ09 Putative uncharacterized protein At4g39870 (Fragment)10054e-107
Q9SMR6 Putative uncharacterized protein AT4g398706506e-066
B9HFG6 Predicted protein4866e-047
B9SZ36 Putative uncharacterized protein4866e-047

Arabidopsis top hits (Blast detail)Scoree value
AT4G39870.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G05590.2); Has 2018 Blast hits to 1865 proteins in 220 species: Archae - 0; Bacteria - 39; Metazoa - 1002; Fungi - 279; Plants - 129; Viruses - 34; Other Eukaryotes - 535 (source: NCBI BLink).10052e-109
AT2G05590.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39870.1); Has 522 Blast hits to 522 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 307; Fungi - 48; Plants - 62; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).2614e-023
AT2G05590.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39870.1); Has 697 Blast hits to 689 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 403; Fungi - 84; Plants - 66; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).2614e-023
AT5G16500.1 protein kinase family protein1262e-007

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
201  50%
 
211  50%

Unigene MembersMember information