RadishBase

| | | |

Information for unigene UN49237

FASTA Sequence

Unigene ID: UN49237	Length: 806	SSR
GGGGAGCAGCTATTGCGTTGTCTTGTACCTCTTTAAGAACCTCACTCTCTCTCTCTCTCTCTTCTCTCTATTACAAAAATAATCCC CAAATCTTGAAAAGTTTTAGGGTTTGAAATTTGAGAGAGAGATGAGTGCTTCAAGGTTTATAAAGTGTGTCACAGTCGGCGACGGC GCTGTTGGAAAGACTTGTCTGCTCATCTCCTACACTAGCAACACTTTCCCCACGGATTACGTGCCTACTGTGTTTGATAATTTCAG CGCAAATGTGATTGTGGATGGAAACACTATCAACTTGGGATTGTGGGATACTGCAGGACACGAAGACTACAATAGACTAAGACCTT TGAGCTATCGCGGTGCAGATGTCTTCTTACTTGCCTTCTCTCTCGTCAGCAAAGCTAGCTATGAAAATGTTTCTAAAAAGTGGGTA CCTGAACTGAGACATTATGCTCCTGGTGTACCCATCATCCTCGTTGGAACCAAGCTTGATCTTCGAGATGACAAGCAATTCTTTGC TGAGCACCCTGGTGCTGTGCCTATCTCTACTGCTCAGGGCGAAGAACTGAAGAAGCTCATTGGGGCACCTGCTTATATTGAATGTA GTGCAAAAACACAACAGAATGTAAAAGCGGTGTTTGATGCGGCTATCAAGGTAGTTCTCCAACCACCCAAGAACAAGAAGAGGAAG AAGAGAAAGTCTCAGAAAGTTGTTCTATATTGTGATTCTACTAGAGACCAACAACAGAGGATGAAGTAGCTCTCACTTGTTGTTTC CTCACAAAGAGGACCTGTTGTTTGTAGTCTTT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_195228 Rac-like GTP-binding protein ARAC3 [Arabidopsis thaliana]	990	3e-105
AAO42256 putative Rho1Ps homolog Rac protein [Arabidopsis thaliana]	987	6e-105
AAB38780 Rho1Ps homolog [Arabidopsis thaliana]	983	2e-104
AAB97458 rac-like small GTP binding protein [Brassica rapa subsp. campestris]	978	7e-104
XP_002278633 PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]	953	5e-101

Swiss-Prot top hits (Blast detail)	Score	e value
Q38912 Rac-like GTP-binding protein ARAC3	990	1e-106
Q38937 Rac-like GTP-binding protein ARAC5	932	7e-100
Q6EP31 Rac-like GTP-binding protein 5	931	9e-100
O04369 Rac-like GTP-binding protein RAC1	925	4e-099
Q39435 Rac-like GTP-binding protein RHO1	921	1e-098

TrEMBL top hits (Blast detail)	Score	e value
Q5PNX9 At4g35020	990	2e-105
O49180 Rac-like small GTP binding protein	978	5e-104
A5AP72 Putative uncharacterized protein	953	4e-101
B9H198 Predicted protein	941	9e-100
B9SXU8 Rac gtpase, putative	940	1e-099

Arabidopsis top hits (Blast detail)	Score	e value
AT4G35020.1 ARAC3 (ARABIDOPSIS RAC-LIKE 3); GTP binding / GTPase	990	1e-107
AT1G75840.1 ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5); GTP binding / GTPase	932	6e-101
AT2G17800.1 ARAC1; GTP binding	914	7e-099
AT2G17800.2 ARAC1; GTP binding	914	7e-099
AT1G20090.1 ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2); GTP binding	911	2e-098

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	2			100%

Unigene Members	Member information