 |
Information for unigene UN49238
| FASTA Sequence |
| Unigene ID: UN49238 | Length: 742 |
SSR | | GGGGACCTTAAAAATCAGAGATTCCAGTTTTCATACTCTTCTCTCTCTCTCTCTTAATACGATTCTGATTCTATTTTTATCACCAA
CCATTCTCCAATTTTCTCTGCCATGGGACACGGAACAATGGCGACACCACCGACCACCACCACCATCCCCGCCAAGACGACGCTCA
TCTTCACGTACGGAACCCTGAAGAGAGGATTCTCGAACCACGTCCTGATGCAAGATCTGATCCGATCAGGCGACTCATCTTTCAAA
GGAGTCTACCAAACCCTAGACAAGTATCCCCTCGTCTGCGGACCGTACCGAGTCCCTTTCCTCCTCAACAAGCCTGGATCAGTCCA
TCGCGTGACGGGAGAGCTTTACGCCGTTTCTCCTCGCGGTCTCTCGCGTCTCGACGAGTTGGAAGGGATCACTCGAGGCCATTACG
TGAGGCAGCCAATCCGCCTCGCTGCTGAGAAACAAGGAGGAGGATATCTAGAGTCGTGCGTGGTTGAGGCGTATTATGCGCACAAG
AGCTACGATGAGAAGCTGTGGGAAAGGAGTAGTGGGAGGTCGTTCGGCGCGTACACGGAGAACGAAGCGCGTGGATACGTGAAGCG
TAAGGATCGACCGCAGCATCTTACCTTCTTGGACCATATCCGTATTTTTGGTTCTTCTCCATGTGATTGATTTTTATTTTCCTTTG
TCACCGCCTTTTTTAAACCTTTTCTCGGGAAATGAAATAAGAAAGTACAAACGC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002882260 UPF0131 protein At3g02910 [Arabidopsis lyrata subsp. lyrata] | 769 | 1e-079 |
| XP_002520075 conserved hypothetical protein [Ricinus communis] | 576 | 2e-057 |
| XP_002325443 predicted protein [Populus trichocarpa] | 563 | 7e-056 |
| XP_002271171 PREDICTED: similar to Os03g0854000 [Vitis vinifera] | 520 | 7e-051 |
| XP_002270495 PREDICTED: similar to Os03g0854000 [Vitis vinifera] | 512 | 6e-050 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9M8T3 Putative gamma-glutamylcyclotransferase At3g02910 | 498 | 1e-049 |
| Q9BVM4 AIG2-like domain-containing protein 1 | 167 | 3e-011 |
| Q4KM86 AIG2-like domain-containing protein 1 | 160 | 2e-010 |
| Q66I06 AIG2-like domain-containing protein 1-A | 159 | 2e-010 |
| Q923B0 AIG2-like domain-containing protein 1 | 155 | 7e-010 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9S256 Putative uncharacterized protein | 576 | 2e-057 |
| B9IPV7 Predicted protein | 563 | 5e-056 |
| A2XP74 Putative uncharacterized protein | 510 | 7e-050 |
| Q84T74 Expressed protein | 510 | 7e-050 |
| Q8LCA5 Putative uncharacterized protein | 505 | 3e-049 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G02910.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Butirosin biosynthesis, BtrG-like (InterPro:IPR013024), AIG2-like (InterPro:IPR009288); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46720.1); Has 210 Blast hits to 210 proteins in 66 species: Archae - 2; Bacteria - 27; Metazoa - 122; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). | 501 | 5e-051 |
| AT5G46720.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Butirosin biosynthesis, BtrG-like (InterPro:IPR013024), AIG2-like (InterPro:IPR009288); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02910.1); Has 249 Blast hits to 249 proteins in 85 species: Archae - 5; Bacteria - 65; Metazoa - 121; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | 359 | 1e-034 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
