 |
Information for unigene UN49272
| FASTA Sequence |
| Unigene ID: UN49272 | Length: 1137 |
SSR | | GAAGTCTTAGTTTGCCAATAAATTCTACTTTTTGTGTTCTTACATATTCAAAACTTGTAATAAAGATGTGTAGTGAAGAATAAACC
GAGAAAGAATAAGAGTCATCATCACTCCACATTTTTTTCTTCAAAGGCTTCTGTTGTGTCACTAGCCTCTTCAGGTTCTTCTTCAA
AAGTATTGTTGTCTTGTATTGTGTTACTATCTTCAGATTCACCAGCGCTTCTCAAACTAAACTTAAAACTGATAGGTCTGCCCATA
AGCTCCTACAGGCAAAAACAAAAACAGCAATGAACTCTCAACATACTTAAAAGAAAGAAAGATAGCAAACTCTATTTACCTTCCCG
TCGAGTTTAAAGATTGCATCCTCAGCTTCTTCTCTAGTAATGAACGAAACAAAGCCATAGCCAGAAGCTCTTCCTCCAGGGTCAGC
GAAAACAACACGAGCTGAGACCAGGTTGAAGTCAGCAGCAGTGAAGAACTCACGGAGATGAGTCGATCTCGCTTTCCAAGCGAGGT
TAGACACATAGAGTTTGTGACGTGTTTCTCCAGGGGAAGAGGTAGCAGAAGGAGGAAGGGGCTTAGGAGGCTTCTTGAACTTTCTT
GCAAAGTTAACCCTTATGATCCTCCCTGAGACTTGGAAAGAATCGAACTTTTCAACAGCGGATTGAGCTTCTTCACCAGAAGACAT
GGTCACGAAAGCGAAACCTCTGTTTTTCCCATCTTTTTGCTTTATTATCTCGACGCTTAAGACAGTCCCGCATTGTCCGAAGAGGT
TGGAGATGTCGTTAACACTCATAGACCAGGGGAGATTGAACACAAAGAGCTTCCTTTTGAGATTCGTCGTCTGGGTGGTTTCTTCG
GTCTTCTCATCCGTAAGGGAAGTTTCTTCCTCCGCGACGGAAGAGAATACAGAGACGATTCGCCGAGCACGAAGAGGAATACTGAG
AGGGGAGACGGGAGAGAGGTTAGTGGGAGTTCGAATACTTAAGGAGATGGGTTTAGTTTGCCTAGAGAAGAGATGAGGTTTTGAGG
ATGAGGAGGAGGACGAAGAAGAAGAAGAGGAGGAGAAAGAGAGAGAGAGGATGGAGAGAGCAGCTTCGAGGACCGCCATTGTTAGT
CCACTTCTTCTGCAACCCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002879549 hypothetical protein ARALYDRAFT_482506 [Arabidopsis lyrata subsp. lyrata] | 856 | 2e-089 |
| NP_181084 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] | 844 | 4e-088 |
| XP_002279685 PREDICTED: hypothetical protein [Vitis vinifera] | 649 | 2e-065 |
| CBI33876 unnamed protein product [Vitis vinifera] | 638 | 3e-064 |
| XP_002527668 ribonucleoprotein, chloroplast, putative [Ricinus communis] | 622 | 2e-062 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P19684 33 kDa ribonucleoprotein, chloroplastic | 286 | 9e-025 |
| Q04836 31 kDa ribonucleoprotein, chloroplastic | 258 | 2e-021 |
| P31209 Polyadenylate-binding protein, cytoplasmic and nuclear | 190 | 1e-013 |
| Q4VXU2 Polyadenylate-binding protein 1-like | 189 | 2e-013 |
| Q98SP8 Embryonic polyadenylate-binding protein A | 179 | 2e-012 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O82299 Putative chloroplast RNA binding protein | 844 | 3e-088 |
| B9SNU9 Ribonucleoprotein, chloroplast, putative | 622 | 2e-062 |
| B9MU33 Predicted protein | 599 | 7e-060 |
| A9PK26 Putative uncharacterized protein | 598 | 9e-060 |
| C6TEI0 Putative uncharacterized protein | 568 | 3e-056 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G35410.1 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative | 844 | 2e-090 |
| AT4G09040.1 RNA recognition motif (RRM)-containing protein | 374 | 5e-036 |
| AT4G09040.2 RNA recognition motif (RRM)-containing protein | 326 | 2e-030 |
| AT3G52380.1 CP33; RNA binding | 282 | 2e-025 |
| AT1G60000.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 273 | 3e-024 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
