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Information for unigene UN49276

FASTA Sequence
Unigene ID: UN49276Length: 789 SSR 
GGATCACACTCGAATCCAAGCACTAACCTTTGATTACAAAAAAAAAAAACATTTTGTCGAGAAGAAGAAGAAGAAGACCTCTCCTC
TCCAAATTTCAATTCGAATTTAATTCGCTCCTCGTCACCTTTCTCCCCGGGAGACGTGATCCGATCTCATCTTCGCGTTCTATATA
TCCTAAGATGGAAGTCGAAGAAGAAGTAAAACGAATGGTGGAGGAGGTTAAGGAGCTCCACGACTCCGCCGCTTCCTTCATCTCTT
CTTCTTCCCATCAAGGCCTCACCCTCCGTCAAAAAGCCTCCTCCCTCGACGCTTCCCTCCGCCGCCTCCACTCAACTCTCGCCTCC
GACAAGCGTCTCGATCCCAAGCTCCTCGAGAAGCTTGAGGAAGATCTGCATCGTGCTAGATGCATGCTCGCTGATGGAGATCTCTC
TTCCTTCTTCCCATCCAAACCCCAAGGACGGTTCGTGAGAATGTTTCTGGGGCCAGTGAATGTTCGAGCCTCGCGTAAAGAGATTC
AGCTTAAAGTCAAAGAAGAATACAATAGCTACAGAGACAAGACTGCTCTTCTCTTTCTTTTCTTCCCTGCAGCACTTATGATTCTC
AGATCTTATTACTGGGATGGATGCTTGCCTGCCTTTCCTGTTCAGTTCTACGAGGCTTGGCTGTTGTTCCTCTATGCTGGGTTGGC
TATGCGAGAGAACGTATTAAGAGCCAACGGGAGCGATATCCGTCCATGGTGGCTATATCATCACTACTGTGCCATGGGGATGGCCC
TTGTCAGCCTCACAT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002874626 hypothetical protein ARALYDRAFT_911340 [Arabidopsis lyrata subsp. lyrata]9275e-098
NP_567356 TMPIT-like protein [Arabidopsis thaliana]9241e-097
BAH56951 AT4G10430 [Arabidopsis thaliana]9177e-097
NP_564420 TMPIT-like protein [Arabidopsis thaliana]8801e-092
XP_002891035 hypothetical protein ARALYDRAFT_473496 [Arabidopsis lyrata subsp. lyrata]8666e-091

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q93XX0 Putative uncharacterized protein At4g104309248e-098
C0Z2M2 AT4G10430 protein9175e-097
Q93ZW4 Putative uncharacterized protein8801e-092
Q9C883 Putative uncharacterized protein T16O9.48163e-085
Q9SZX7 Putative uncharacterized protein AT4g104308011e-083

Arabidopsis top hits (Blast detail)Scoree value
AT4G10430.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TMPIT-like (InterPro:IPR012926); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G33230.1); Has 196 Blast hits to 196 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 146; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).9245e-100
AT4G10430.3 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TMPIT-like (InterPro:IPR012926); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G33230.1); Has 196 Blast hits to 196 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 146; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).9245e-100
AT1G33230.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TMPIT-like (InterPro:IPR012926); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10430.3); Has 198 Blast hits to 198 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 148; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).8806e-095
AT4G10430.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TMPIT-like (InterPro:IPR012926); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G33230.1); Has 192 Blast hits to 192 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 142; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).6153e-064

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
91  50%
 
61  50%

Unigene MembersMember information