RadishBase

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Information for unigene UN49291

FASTA Sequence

Unigene ID: UN49291	Length: 955	SSR
GGTGTGTGAATGAATTGATCACAGTTTCAATACAACTAATTAGCTAAATGAACTTCTTTCTTTAACATAAATAAAAAAACCAAAAA GATCAAAAAGTCATGAAACCAAACGTGTGATTTTGATTAGTCATCATCATTAGGTAGAAGAACAACATCCTTTCCTGTTAGTCCCA GACGAATCCGATATGTTAATAGCAGTCCCTTGCCCCGGAACCGGAAGACCACCCGCAGCTTCCTGCGCCGCCAACGCTTTCTTACT TATAATATGATAAATCTCAGACAAAATCGTCTGAAACGCTTTCTCAATATTACTCGCTTCCAAAGCAGACGTCTCGAGAAACGACA GACCTTCCTTCTCAGCGAGTGACCTACCGTCCTCGTCAGCAACGGATCTCAGGTGGTTCAGATCGGATTTGTTCCCCGCCATCATG ATCACAATGTTGGAATCGGCGTGGTCCCTGAGCTCGCGTAACCACCTGAGAGAGTTCTCGAAGGTTTGTCTCTTGGTGATGTCGTA GACGAGGAGAGCTCCGACGGCTCCTCTGTAGTATGCGCTCGTGATGGCTCGGTAACGCTCTTGTCCTGCTGTGTCCCAGATCTGAG CCTTAACCGTTTTGCCTTCTACCTGTAGAGTTCGGGTGGCGAATTCGACGCCGATGGTGGATTTGGATTCGAGGCAGAACTCGTTT CTGGTGAATCGGGAGAGGATGTTGGATTTGCCGACGCCGGAGTCGCCGATGAGGACGATCTTGAACAAGTAGTCGTACTCGTTGTC TATTCGATTCGCCATTTTTCTCTCTCTCTCTCTCTCAGACCCTACCTAGCTTCTGATCAACCGTTTTAAAGCAAAGCCGGAAGGAG GATCGAGAATGGGAAGCTTCAACTGTTTTTTTTACCTTCGTTCTGTTTTGGTTTTCGTCTCTCTTCTTCTCTATACGTTTGCGAGT TTTGTGCCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_172221 RAB GTPase homolog A2B [Arabidopsis thaliana]	1031	6e-110
ABW81091 Gtpbnd1 [Cleome spinosa]	1030	8e-110
Q40193 RecName: Full=Ras-related protein Rab11C	979	7e-104
XP_002307838 predicted protein [Populus trichocarpa]	972	4e-103
XP_002329949 predicted protein [Populus trichocarpa]	967	2e-102

Swiss-Prot top hits (Blast detail)	Score	e value
Q40193 Ras-related protein Rab11C	979	3e-105
Q96283 Ras-related protein RABA2c	964	2e-103
Q39434 Ras-related protein Rab2BV	952	4e-102
Q40523 Ras-related protein Rab11A	926	4e-099
Q40723 Ras-related protein RGP2	833	3e-088

TrEMBL top hits (Blast detail)	Score	e value
B2BXQ4 Gtpbnd1	1030	6e-110
B9HBS5 Predicted protein	972	3e-103
B9N3X5 Predicted protein	967	1e-102
C6TMZ9 Putative uncharacterized protein	966	2e-102
B9S3C5 Putative uncharacterized protein	964	3e-102

Arabidopsis top hits (Blast detail)	Score	e value
AT1G07410.1 ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B); GTP binding / GTPase/ protein binding	1035	9e-113
AT3G46830.1 ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C); GTP binding	964	1e-104
AT5G59150.1 ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D); GTP binding	959	6e-104
AT1G09630.1 ATRAB11C (ARABIDOPSIS RAB GTPASE 11C); GTP binding	826	2e-088
AT4G18800.1 ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D); GTP binding	747	2e-079

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	2			100%

Unigene Members	Member information