RadishBase

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Information for unigene UN49302

FASTA Sequence

Unigene ID: UN49302	Length: 1026	SSR
CATGGCCACAAATGGTTACAGCTTCCCAGCAATGGAGGGTTTACAGATCGAGATTGTATTTTTTTGAAGAAGGCATACAAAAGCAA AGAACTGGTCTACTTAGGTGATAATAAAAAAACAAACCGAGCAAATTAACAATAACAAAAAAATCAAGGCGTTGCAACTCTACTTC CTCCTCTGCGTCCACGTCCATCAGGTCTCTCTGAATACTCTCTCCTAAAAGGTCTAGTGGGTCGGGAGTTTGAGAACTTCTGTCTC CTTCTAATCAACAATCTCTCAACTTCCTTCTTCTTCTCCTCAGCTTTCATTTTGGTGGGACTAGGGCGGTACAATATCACGGTCCT CCCGATTTGGCCAACAGCAACAGAACCAGTGGCTTCCTCCAAATGCATAACAGCGTCCTCCATCTCCTCTGGAGATGTCTTCCGTA TCTTCACCTTTAAGAGCTCGTTCTTCTCGAGAGTCTCGAGGAATGAGAAAACCACCGAATCAGTAACGCCAGATTTTCCGACGAGT TGACATTTCAATTTGTCACCAAGACTATGGGCGTATGAAGCAAGTTCCTTCTTCTCCTTTATCGTCAACTTCAAACCCGAGCCCCG AGCCTTCTTCTTCATCTTCTCTATCTTATCCTCCTCGTAGTCGTCCTCACTTCCTCTCGCGGATACCATTCCACTCTCCACCTCTT CTTCATCTTCTTCTTCTTCTTTGTAATCGTATTCCTCGCTCTCATCTTCTTCTCCGAGGTCCGGCTCATCGATGGCAGAAAAGGAT TTCGCTACGAGTGAAGAAGAAGAAGAAGTAGAGTGAAAAGGAAGCGGAGGCTTTGAAGAGATTGATTGAAACCGAGGCTTGTTACA GCGGCTGGATTGACATGTTACAGCGGAGAAGCGAAAGGGTCTGATGAAGAGACAGAAGGAAGACGGTGGTTCGGGATGTCGGAGAA GGTTGTGGATAAGATGTGTCGATGAAGAAGACGGTGGTTGTATTCTTACGCTCCCCATCTGTGTTTAATTCCTAGTTTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_195615 putative RNA-binding protein containing KH domain protein [Arabidopsis thaliana]	1025	4e-109
XP_002868881 hypothetical protein ARALYDRAFT_490673 [Arabidopsis lyrata subsp. lyrata]	996	8e-106
NP_849521 putative RNA-binding protein containing KH domain protein [Arabidopsis thaliana]	925	1e-097
XP_002265886 PREDICTED: hypothetical protein [Vitis vinifera]	453	8e-043
NP_179731 RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]	441	2e-041

Swiss-Prot top hits (Blast detail)	Score	e value
P0AGK6 RNA-binding protein yhbY	123	6e-006
P0AGK5 RNA-binding protein yhbY	123	6e-006
P0AGK4 RNA-binding protein yhbY	123	6e-006
P0AGK7 RNA-binding protein yhbY	123	6e-006

TrEMBL top hits (Blast detail)	Score	e value
Q9SVI9 At4g39040	1025	2e-109
Q3E9N8 Putative uncharacterized protein At4g39040.2	925	1e-097
C6TB79 Putative uncharacterized protein	431	2e-040
Q9SJU2 Putative uncharacterized protein At2g21350	416	1e-038
A5APQ9 Putative uncharacterized protein	406	1e-037

Arabidopsis top hits (Blast detail)	Score	e value
AT4G39040.1 RNA binding	1025	1e-111
AT4G39040.2 RNA binding	925	5e-100
AT2G21350.1 RNA binding	441	7e-044

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	2			100%

Unigene Members	Member information