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Information for unigene UN49307

FASTA Sequence
Unigene ID: UN49307Length: 831 SSR 
GACAAACATTCATACGATATATATTATGTAGTGTCCCATAATAGAAGTAGGAAATGACAATAATTAGATAGAAAAAGAAGACATAT
GACACCACCAAATACTACTCCAAGCTCTATCTCCCCTTTGGAGATGGCTACAATGGCGCCCACACACTCACCGACACACACACACA
AATCCACAACACAAAGGAAGAAGAGGAGAGAACGCTAGAGCCGTTGAATTCAGATGGACTTACTTACAATTGCCATCCTACGGCCA
GCAGTCACTCTCTATTTCTCTCTTCAAAAAGAAAAAAAAGATCACACAGATAATAGTTAGGAATATTAGTTTTTCAGAGGACGGGG
GAGAAGTTGAGGCGAGAAGTGTAAGTTGCTTTAGGAACCCAGTTTCTAGGAACGACGTCAGTGGCGGACAGTGTTCTACCGGCGGA
CAAAGTGGTGATCTTGACGGAGAATGGTCCTCTGAGTGGCCCTCCAATGATGCACCAGTTGGCTCCCCATACGTGCTTCATCTCTA
ACCATTCCCTCGCTCCTGCTTGGCGAATATGCATGGAGCCAATGTCGCCTTCTCCTTCTTCAAACTCGACCAGTAGAGACAACCAG
AAATCAGTTGAGCCTTCGTTCACATGGAACGCTATGTTCTGCCGTCTATATTTGCATGCCGTCCGGCGGTAAATAACGGGGATGAG
ACCACGGTTGCGAAGAGGACCAGACTCTCCGGTGATAGCCAATCGACCAAAGGCAGCGCCACTGAGATCAAAGTGAGTGTTGGTTT
TGGAGCAGCCGGGACACTCATCAGTGACGATGACAGTGACAGCTCTCCGGGAACACC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
ACU86966 expansin B1 [Raphanus sativus]8461e-088
BAJ34284 unnamed protein product [Thellungiella halophila]8442e-088
NP_567803 expansin B3 [Arabidopsis thaliana]8399e-088
AAM64784 putative beta-expansin/allergen protein [Arabidopsis thaliana]8399e-088
XP_002867458 ATEXPB3 [Arabidopsis lyrata subsp. lyrata]8381e-087

Swiss-Prot top hits (Blast detail)Scoree value
Q9M0I2 Expansin-B38394e-089
Q9SKU2 Expansin-B16763e-070
Q7X6J9 Expansin-B176281e-064
Q0DZ85 Expansin-B166191e-063
Q9SHY6 Putative expansin-B24041e-038

TrEMBL top hits (Blast detail)Scoree value
C8CC40 Expansin B18461e-088
B6SHE3 Beta-expansin 38396e-088
Q8LBG2 Putative beta-expansin/allergen protein8396e-088
A8MSF9 Uncharacterized protein At4g28250.27877e-082
B9N2B8 Putative uncharacterized protein PtrEXPB27098e-073

Arabidopsis top hits (Blast detail)Scoree value
AT4G28250.1 ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3)8403e-090
AT4G28250.2 ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3)7883e-084
AT2G20750.1 ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1)6924e-073
AT1G65680.1 ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)4041e-039
AT1G65681.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: sexual reproduction; LOCATED IN: extracellular region; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: ATEXPB4 (ARABIDOPSIS THALIANA EXPANSIN B4) (TAIR:AT2G45110.1); Has 1362 Blast hits to 1361 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 20; Plants - 1323; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).3691e-035

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
72  100%

Unigene MembersMember information