Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN49329

FASTA Sequence
Unigene ID: UN49329Length: 961 SSR 
CGTTAGATAACTTTTCCGATAATAGATAAAATCTTAAGACATAGAGTAAAAACCAAAAACTACTTATTGTTGTTCACACATCAAGC
TTAGGCTCTGTCCTTTCCTTTTCCCTTGCCCTTGTTGTTAGAACCAGACTGCTTGCCAGAATTGAATTGCTTCTTGTTTCCATCGG
ATGATTGACCTGGGCTCTGGTTAGGACTCTTTCCACCCTTTTTAGCGGGGTGTGGTGTAGCTGTGTGCCCGCCCTTCTTCTTCTTC
TCTTCAGTGTTCTGAGTGGCTGCAGTTTTGGTCTTCTTTGCTGGGACAGGTGTTTTGGAAGCAGATGCAGTGGCCCTCTTCTTGTT
GCTCGGCTCCTCAGGCTGCTTAGGGGTCTCCTCCTCTTCCTCTTCATCCTCCTCCTCAGAGTCATCTTCTTCATCCTTCTCCTCCT
CAGACTCATCATCATCATCAGACTCTGACTCAGGCTTCACTTCAGCAGGCTTGGCTTTTGGTATTGAGCCAGCAGCCTTGGAAGCA
GCAGCAGCATTCCCAACGGAAGTGACAGTTGAAGTAGCAGGAACCACTTCCTCCTCCTCGGAATCAGAAGGGTAGTCCTCCTCTTG
ATCGATGTTGGGAGATCTGTAGCCAACAAAGTGGACACTACCACTCTCCAAAGAGTGAGAAAGCTCAAACTCCTGCTCGAAGACAA
GGTCAAAGGTCATCTGAGGAATGTGGTCTTGAGAGAGCGTTCCAATGACATGTTTCTTCCAATCAATAGTCACGTACAAGAGACCA
GATTCTCCCTTTTTGGCATCGATTGTAGCCTGAGAAAGGTGGATGAGATGGTCTACTTGGGGCCTCACTTTTAGTGGCATCCCAGC
CTTAACTTCAACTCCCCAAAATTCCATTGTTGATCAAGGAGGAAAAGAGAAGAGAGATTCGACAGGAGAGTTTTAGGGTTCTGCTA
TCTAGAGAACAATCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_851056 histone deacetylase HDT2 [Arabidopsis thaliana]7162e-073
NP_197657 histone deacetylase HDT2 [Arabidopsis thaliana]7091e-072
AAB70032 putative histone deacetylase [Arabidopsis thaliana]5182e-050
XP_002313645 histone deacetylase [Populus trichocarpa]5111e-049
NP_566872 histone deacetylase HDT1 [Arabidopsis thaliana]5048e-049

Swiss-Prot top hits (Blast detail)Scoree value
Q56WH4 Histone deacetylase HDT27383e-077
Q9FVE6 Histone deacetylase HDT15242e-052
Q6V9I6 Histone deacetylase HDT14669e-046
Q9LZR5 Histone deacetylase HDT34166e-040
Q9M4U4 Histone deacetylase HDT33646e-034

TrEMBL top hits (Blast detail)Scoree value
Q3E700 Putative uncharacterized protein At5g22650.27313e-075
B9HQL3 Histone deacetylase5119e-050
A9P996 Putative uncharacterized protein5046e-049
A9P950 Putative uncharacterized protein4803e-046
A9P9Y3 Putative uncharacterized protein4803e-046

Arabidopsis top hits (Blast detail)Scoree value
AT5G22650.1 HD2B (HISTONE DEACETYLASE 2B); histone deacetylase7392e-078
AT5G22650.2 HD2B (HISTONE DEACETYLASE 2B); histone deacetylase7321e-077
AT3G44750.1 HDA3 (HISTONE DEACETYLASE 3); histone deacetylase/ nucleic acid binding / zinc ion binding5294e-054
AT5G03740.1 HD2C (HISTONE DEACETYLASE 2C); histone deacetylase/ nucleic acid binding / transcription repressor/ zinc ion binding4165e-041
AT4G26630.1 EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55660.1); Has 253164 Blast hits to 95130 proteins in 2571 species: Archae - 852; Bacteria - 27744; Metazoa - 108483; Fungi - 29060; Plants - 10256; Viruses - 1718; Other Eukaryotes - 75051 (source: NCBI BLink).1362e-008

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  100%

Unigene MembersMember information