 |
Information for unigene UN49338
| FASTA Sequence |
| Unigene ID: UN49338 | Length: 1224 |
SSR | | GGTACAAAGGCAAGCTGCCATGTCCAGCAACTAATGGGAAGATCCTGTTCATCCAATGAATAACCAAACGACGAGAAAACTATGAC
TTCTGTTAATTGAGTTGCTCGAAACAAAGAACAGCAGCAAAACTTATGAAAAAACCGGCTGACTCCTTGTTAAGCATCAGACTCTT
TCTTGTCTTCTTCAGCCTCTCCTCCTTGAGTAACACCAACCTCAGCCGGTCTTATAACTCGATCAAACAACGTGTAACCAGACTTC
AGGACATGAGCAATTGTGCCTTCTGGCTTAAAAGCATCCGGGACTTGAAACACTGCGTTATGTCTGTTTGGATCAAACGGCTCGTT
GATAGGATCGTACTTCTCCATACCAAATTTCTTAAACACCTCAGCAAGCTGTTTCTCAGTCATCTCCACACCTTCTAAAAGGGTCT
TTAAGAGCGGAGTAGCTCCAGCCGAATCTTCCGTAGTGTCAAGCTTTGAGAAGCTTTCCTTGACAACGGAAGAAGCTCTTCCAAGA
TTATCCGCCACATCCAAAAGGCTCTTTGCAAAATTCTGTATGGCATACTTCTTGGTGTTTTCAGCATCACGTCTTGTTCTGTCCAT
AACATTCTCCATCTCTGCGTAAGTGCGAAGAACTTTGTCTTTCATTTGCTTAATCTCTTCCTCCTTTTCAGAAAGCAGCTCTTCCT
TCTCAGCAACGAGCTTCCTCAAATCATCCACGGACAACAACTCCTCATCATCATCATCATCACTCCCGGAATCTGAATCAGGAACT
GCAGCTCGTTTATCACTTCTCCTCCTTCACGAAACTTTGGAGGGTTCTGAGTCAGGGCCTGACTCGTTTGCCTCAGCTGTAGCTTT
CTCCCCAGATGTCTTCGAGGCCTCAGGGTTGCTCTCCTTTTCATTTGATTCAGGCGTGGTGGAGGAAGAAGAAAAAGAGAACCTTT
GGAGTGGAAACGAACCAAGAGGCAGCACCTGAGCTGCAGCAATCTTTTGTGAAAATTCGTTAACGATGGAGTGATACCGGCTCGAG
AATATAGGAGCCCCGTTCCTCGCCGGAAGAGCGGCGGCGGAGAGAGAGGAGCGTAAGCCCGCGCTGCGGGAAACTCGCGAGAGAAT
TCTCGGAACAAACATCAGGGAATGCACGGAGAAAAAACAAGGCAGAGATCAAGACGAAGTTTAATCGAATCGTGTTTTGAGGAAGA
TGGTCAGGGTCCAGAGGCCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_567757 molecular chaperone GrpE [Arabidopsis thaliana] | 1238 | 9e-134 |
| XP_002867541 hypothetical protein ARALYDRAFT_492124 [Arabidopsis lyrata subsp. lyrata] | 1200 | 2e-129 |
| CAB36524 grpE like protein [Arabidopsis thaliana] | 1074 | 1e-114 |
| BAA13686 AR192 [Arabidopsis thaliana] | 884 | 1e-092 |
| XP_002531197 Protein grpE, putative [Ricinus communis] | 805 | 2e-083 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P38523 GrpE protein homolog, mitochondrial | 345 | 1e-031 |
| Q8YEV0 Protein grpE | 338 | 9e-031 |
| Q79V15 Protein grpE | 256 | 3e-021 |
| B3Q970 Protein grpE | 256 | 3e-021 |
| Q6NCY6 Protein grpE | 253 | 7e-021 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LB47 GrpE protein homolog | 1238 | 6e-134 |
| Q9SZ18 GrpE protein homolog | 1074 | 7e-115 |
| Q96515 GrpE protein homolog | 884 | 7e-093 |
| B9SYX8 GrpE protein homolog | 805 | 1e-083 |
| A5BCM7 Putative uncharacterized protein | 797 | 9e-083 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G26780.1 AR192; adenyl-nucleotide exchange factor/ chaperone binding / protein binding / protein homodimerization | 1239 | 3e-136 |
| AT5G55200.1 co-chaperone grpE protein, putative | 714 | 2e-075 |
| AT1G36390.1 co-chaperone grpE family protein | 123 | 7e-007 |
| AT1G36390.2 co-chaperone grpE family protein | 123 | 7e-007 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
