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Information for unigene UN49450

FASTA Sequence
Unigene ID: UN49450Length: 728 SSR 
GAAAAAAGTTTTCCCATATATAATTTTCATCTATAACAGAGAGGTATTGCCTGAGAGGTTTGCGGAGACACCTAAATTACATAAAA
CAGCAACTAGGAAACAAAGAGTTGCTTAGACATTTGATAATCCAACTAAATGATAGGGGCCTTATTGAATAATCAACCTTGTCTTC
CAACAAAAAGTGAAATATTCAAACCAAGTCCCTTCAATGTTCCAACGCCAATTTGAGTATGTAATCTGACAAACAATTAGACAAGG
TGATTGGTAATGTTGATATATCAATCATCTGGTGGTTGGAAGGAACACTCGAATCAGCTCTTTCACAGTCACTTTTTTTCCTACAA
GTAGGGCACTTGCCTTGCTTAGATATCGCCATCTGTATGCATCCCTTGCAGAAGATGTGGCCGCATTTGGTTGACACCTCCTCAGT
AAACTGACACATACAAATCGGACACGAAAATTTAGGCTCCTCCGGTGGAGGAGGAGGAGGAGGAGTTGGAGAGACATCCTCACAGT
CGATCACAGGTTGGTTAGGAGGAACTCCTCTCCGTTTGCTGGGAGACAACCTAGTCATACCACCTGACTCTACACCATCCCTCGAA
CGTCTCCGGCGTGCACCTGATGATTTGCTTATAGCTTCAGCAAAATCACTGGCGGATGATTCAACAACATCATCTTCAATAGCATC
CACATCAATCATGGCATGGACAGGCTGCGAAGCTTGAATA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002882517 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]3182e-027
BAC43036 putative RING finger protein [Arabidopsis thaliana]3154e-027
NP_187376 RING/U-box domain-containing protein [Arabidopsis thaliana]3154e-027
NP_568701 RING/U-box domain-containing protein [Arabidopsis thaliana]2869e-024
AAK76707 unknown protein [Arabidopsis thaliana]2869e-024

Swiss-Prot top hits (Blast detail)Scoree value
B5DF45 TNF receptor-associated factor 61361e-007
Q3ZCC3 TNF receptor-associated factor 61342e-007
P70196 TNF receptor-associated factor 61342e-007
B6CJY5 TNF receptor-associated factor 61332e-007
A7XUJ6 TNF receptor-associated factor 61332e-007

TrEMBL top hits (Blast detail)Scoree value
Q8GX56 At3g072003153e-027
Q9SFV0 Putative RING zinc finger protein3153e-027
Q8GS41 Putative RING zinc finger2867e-024
Q8LF11 Putative uncharacterized protein2867e-024
Q94AH4 Putative uncharacterized protein At5g48655/K15N18.13 (Fragment)2867e-024

Arabidopsis top hits (Blast detail)Scoree value
AT3G07200.1 zinc finger (C3HC4-type RING finger) family protein3152e-029
AT3G07200.2 zinc finger (C3HC4-type RING finger) family protein3152e-029
AT5G48655.2 zinc finger (C3HC4-type RING finger) family protein2864e-026
AT5G48655.1 zinc finger (C3HC4-type RING finger) family protein2864e-026
AT5G48655.3 zinc finger (C3HC4-type RING finger) family protein2864e-026

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
81  50%
 
111  50%

Unigene MembersMember information