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Information for unigene UN49460
| FASTA Sequence |
| Unigene ID: UN49460 | Length: 1057 |
SSR | | GCCTCGTTCCAACTTTCCAAGATCATGGTATATGCCAATGTCTTGAAATTATTTAGCAGAAAAAGAGTTTACAGGCAATAACCAGC
TACTGCTTGACACACGATAGATTTACGAAAAGCGGCTCATTATTTAAAAGCCCATTATTTAGGCCCATTAAACAGACCCATTAAGA
TCCAAGAGAAAACAAACAGAGAAAGCTCAACGACGCAAATGATTTTTACTCGGTAAAGTTTAGGATAGTGGCGCCGTGCTGAGCCG
CCTGAGCTTCCGCCGCCGGCTTCACATCCTTCGACGGCTCAACATGTTTCCCGGTGAGCTCCACAGGCAAATCAGAGGCAACACCT
TTCAAGTAAAAAGTGTAGAACAGCTTGGTCGGATACACAAGCTGACGAAGCTTGACCTGTCCGTAAGCTCCTTCGAAGACTCCGGA
GCCACCTGTGATGGCGAGTAACGTGTCCTCGTAAGTCAGGTAAGGTCCCTGAACGGAAATGTGACCGTACTCTCCGAAGTAGAAGC
TGTAAGAAGCTTCGAAGCGGTCGCCTTTCTTCTCGGGAACGTGCTGGATCAAAACGCAGAGTCCCGCGGTGATCCCGACGCGTTTC
TTGAGGTCTCCAGTGTAGAGTTTGTTCGTGAAAGGGACGAGGTCGCCGATGCAAAGCTGCTGTGGGTTCTTGCCGAGTTTTAGAAC
CGCTGGGCTGTTTCGATCTCCTTCGTTGAACTCGTACACGTTGAGTTCTTGGATCTTAGTTGGTCTGGAGTTCTCGCTGCTGCTGC
TGCACATGGTTCTGAAGAAACCTGGAGTGGATGAGTAGGTGATGGATCTTGATCGTGTGGAGAAAGTTGGACCGTTGGATGAGATC
CTTAGGTTATGGAAGGAACTGGAGAAACCCGAAAGAGGGTTTTGGTGTTTGCGAGAGATGTTCCTTAGAGTTACAAGAGAGATCGA
TGCAGCAGCAGCAGCAGAGGAAGCCATGATCATAGACTTGCCTGTCTGATACAAAGAGGAAAGCTGGTTTTGTGTTTAAGTTGAAG
GGGTGAAGAGATAGAGACTAGCTTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABV89668 ERD12 protein [Brassica rapa] | 1107 | 1e-118 |
| NP_172786 allene oxide cyclase [Arabidopsis thaliana] | 1087 | 2e-116 |
| XP_002889998 hypothetical protein ARALYDRAFT_334627 [Arabidopsis lyrata subsp. lyrata] | 1076 | 5e-115 |
| NP_566777 allene oxide cyclase 3 [Arabidopsis thaliana] | 948 | 3e-100 |
| XP_002875279 hypothetical protein ARALYDRAFT_484340 [Arabidopsis lyrata subsp. lyrata] | 941 | 2e-099 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q93ZC5 Allene oxide cyclase 4, chloroplastic | 1087 | 1e-117 |
| Q9LS01 Allene oxide cyclase 3, chloroplastic | 948 | 1e-101 |
| Q9LS02 Allene oxide cyclase 2, chloroplastic | 795 | 8e-084 |
| Q9LS03 Allene oxide cyclase 1, chloroplastic | 787 | 6e-083 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A8IXX4 ERD12 protein | 1107 | 8e-119 |
| Q0WP37 Putative uncharacterized protein At3g25780 | 948 | 2e-100 |
| D1GC08 Allene oxidase cyclase | 911 | 4e-096 |
| D1GC09 Allene oxidase cyclase | 910 | 6e-096 |
| D1GC07 Allene oxidase cyclase | 900 | 8e-095 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G13280.1 AOC4 (ALLENE OXIDE CYCLASE 4); allene-oxide cyclase | 1088 | 7e-119 |
| AT3G25780.1 AOC3 (ALLENE OXIDE CYCLASE 3); allene-oxide cyclase | 949 | 9e-103 |
| AT3G25770.1 AOC2 (ALLENE OXIDE CYCLASE 2); allene-oxide cyclase | 796 | 5e-085 |
| AT3G25760.1 AOC1 (ALLENE OXIDE CYCLASE 1); allene-oxide cyclase | 788 | 4e-084 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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