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Information for unigene UN49479

FASTA Sequence
Unigene ID: UN49479Length: 570 SSR 
AGATCATAATAATAAGTATCTCTTAGATTAATATAGTAGTATAAAGTAAAGCAACAAGAAGAGAAAGACTAGGGAGTGGAGAGTAC
AAGGACATTAAAGAGGGAAGAGGAGGCGAGAAAGATGAAGGAGAGCAAGACTAGGAGGAGGGAGAGGGCGACGTGATTGCAGAAAG
AAGAAAGGGTCTTGCAGAAGTCTGGGAGAGGAGTGTGTTTGATGCCGGTTTTGTTGAGGTTTGTTACTCCAATAGCGGCTGATCCA
GCGCTCATTATCAAATAGCTGAAGACCTGATCGAAGATGAAGCAAAGCCAAGCTTGGGAGCGGGAGGGTGTGATGGGTGATCCAGT
GAAGAGCCTGTAAATTCCTAGACAGAGGTGGACCAGGGAGTAGAGAATGGTCACCGTGCATGCCCCCACCACATACTGCCATAGCA
GTGGCTGAAGCAGCCAAGCAGCCTCCTCTGAGGGACACCTGAACCCCCTCCCTCCTCCTCCTCCTTTTTTCCTCTCCATTTCTGTT
CATTCGATCTACCTTTTTAACTTTTTTTTTCTCTGCTTCTACTCTAATCTATCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002889325 F20B17.20 [Arabidopsis lyrata subsp. lyrata]5195e-051
AAF68111 F20B17.20 [Arabidopsis thaliana]5142e-050
NP_178096 uncharacterized protein [Arabidopsis thaliana]5142e-050
NP_188251 uncharacterized protein [Arabidopsis thaliana]3332e-029
XP_002885133 predicted protein [Arabidopsis lyrata subsp. lyrata]3304e-029

Swiss-Prot top hits (Blast detail)Scoree value
Q1PFB8 UPF0497 membrane protein At1g797805141e-051
Q3EB59 Putative UPF0497 membrane protein At3g163003331e-030
B9GGL4 UPF0497 membrane protein 133132e-028
A7P756 UPF0497 membrane protein 143096e-028
B9GXD6 UPF0497 membrane protein 143061e-027

TrEMBL top hits (Blast detail)Scoree value
B8A927 Putative uncharacterized protein2783e-023
C5XIF2 Putative uncharacterized protein Sb03g0333202783e-023

Arabidopsis top hits (Blast detail)Scoree value
AT1G79780.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT3G16300.1); Has 167 Blast hits to 167 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).5158e-053
AT3G16300.1 integral membrane family protein3331e-031
AT3G55390.1 integral membrane family protein1402e-009

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  100%

Unigene MembersMember information