 |
Information for unigene UN49521
| FASTA Sequence |
| Unigene ID: UN49521 | Length: 941 |
SSR | | CGTGGCCACAGAAACTCACAACTTAATCACTAGAATCCCCACGACGACGACGACGACGACGATGGCTTCTCTCGCTACTTCCATCG
CCGGAACTGGAACCTCCAAGATTCTCGTTTCATCATCTTCAAAGAGAAATGGGTTTCCTGTAATCTCCTATCCCAACTCGAGAGTC
TTCTTCCTTTCCGCTAGACCGATCTCTAAAGGTGGGACCTCTCCCCGATCGGCGATACACGCTTCGAGCCAAGAGGAAACAAAGTC
TTCACCTTTCGCATCCGTTGCATCACCGCCGGGTCTATACTCAGCTCAGACTTTCGATTTGACTCCTCAAAATGTCGACTTGGTCC
TCGAAGATGTCAGGCCGTTCCTCATCTCCGACGGTGGGAACGTCGACGTTGTTTCTGTTGAAGACGGCGTCGTTTCTCTCAAACTC
CAAGGAGCATGTAATAGCTGTCCGAGTTTTCCAACAACCATGACGATGGGAATCGAAAGGGTACTCAAAGAGAAGTTTGGAGATGC
TTTGAAAGATATTCGACAAGTTTTTGATGAAGAAGTTAAGCATATAACCGTGGAGGCAGTGAATGCTCATCTTGATATACTGAGAC
CAGCGATCAAGAACTACTGAGGAAGTGTGGAAGTTTTATCAGTTGAAGGGGAAGACTGTGTTGTCAAGTACGTTGGACCTGAATCG
ATTGGAATGGGAATTAAAGCAGCGATTAAAGAAAAGTTCAAGGACATATCTAATGTTACCTTTACAAGCTAGAAACTGTATATGTA
AAAAAAAAACACAAAGTTGCTCTTTGTTTAAGCTTATTTCATTTTGTAATGTCCACATCACTAGTAGTCCCCTAGAGCTATCTTGC
AAAGTTGATCAAGGACAGTGTGTAGACAAAGAAGCAAGTTGTTCTCCAAGTCACCAGAAAATAAAAAGAACACTGTTTTAT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_567219 NifU-like protein 1 [Arabidopsis thaliana] | 862 | 2e-090 |
| XP_002278510 PREDICTED: hypothetical protein [Vitis vinifera] | 647 | 2e-065 |
| ACU16433 unknown [Glycine max] | 638 | 2e-064 |
| XP_002515241 Nitrogen fixation protein nifU, putative [Ricinus communis] | 629 | 3e-063 |
| BAJ90385 predicted protein [Hordeum vulgare subsp. vulgare] | 617 | 6e-062 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q93W77 NifU-like protein 1, chloroplastic | 862 | 1e-091 |
| Q93W20 NifU-like protein 2, chloroplastic | 242 | 9e-020 |
| Q84RQ7 NifU-like protein 3, chloroplastic | 215 | 1e-016 |
| Q84LK7 NifU-like protein 1, chloroplastic | 211 | 3e-016 |
| O32119 Putative nitrogen fixation protein yutI | 167 | 4e-011 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| C6T431 Putative uncharacterized protein | 638 | 2e-064 |
| B9RNA2 Nitrogen fixation protein nifU, putative | 629 | 2e-063 |
| B9GSW6 Predicted protein | 613 | 1e-061 |
| C5X1V6 Putative uncharacterized protein Sb01g037130 | 607 | 6e-061 |
| C0P617 Putative uncharacterized protein | 603 | 2e-060 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G01940.1 NFU1; structural molecule | 863 | 8e-093 |
| AT5G49940.1 NFU2 (NIFU-LIKE PROTEIN 2); structural molecule | 242 | 8e-021 |
| AT4G25910.1 NFU3; structural molecule | 215 | 1e-017 |
| AT5G49940.2 NFU2 (NIFU-LIKE PROTEIN 2); structural molecule | 204 | 2e-016 |
| AT1G51390.1 NFU5; ATP binding / structural molecule | 125 | 3e-007 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
