RadishBase

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Information for unigene UN49523

FASTA Sequence

Unigene ID: UN49523	Length: 796	SSR
CTCTCACCCTACCCGACGCTTCTTCTTCTTCTTCTTCTTCTTCAGATTCTCTCTTTTATTAGGGTTACCAATTATCAGCGATCAAA AATCGATGGCCTCTCTCGATTCAGACGTGAACATGGTTCCCGCAGGAGAACCCTCAGCCCCTTCGTCTTCGTCTGCGAAGAAGGCG AAGAGATTCGAAGTGAAGAAGTGGAGCGCCGTGGCTCTCTGGGCTTGGGGTAACCGCCGAACAGTTTCTCTTTTAATACCATCTGG AATTATGATCGTTCGATTGTATCCGTTTCTTTAACGTTAGCTAGGGTTTTCTTTTTAATTGATTTGATCTTTTTTTTTGTTTTTGT TTTGGTTGGCAGATATCGTTGTTGATAATTGCGCCATCTGCAGAAACCACATCATGGATCTCTGCATTGAATGTCAGGCTAATCAG GCTAGTGCGACGAGTGAGGAATGCACTGTTGCTTGGGGGGTTTGCAACCACGCCTTCCACTTTCACTGCATCAGCAGATGGCTAAA GACTCGTCAAGTTTGTCCATTAGATAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAAACCATCTAATCGTACCAGCAAATAT GTGTCTAATCAAAGATATCAGGGTCATTTGGTTGCCGCATATGACGCTGATATCGCTCAAAGTTCTTTTGTGTTTTTTTTTTAATT TGGTTTGTCGCAAGTTGTCAAAACAGAGATGTTACTCTTCACTGAACCTATTATGTTTTGCTTTGGGCGATGTCTTTAATTTCAAG AAAATATATAGTTACTGCGGAC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
AAL87158 putative ring box-1 protein [Oryza sativa Japonica Group]	432	1e-040
NP_568396 RING-box protein 1 [Arabidopsis thaliana]	432	1e-040
BAD44845 putative ring-box protein [Oryza sativa Japonica Group]	432	1e-040
ABC41134 RING-box protein [Arachis hypogaea]	432	1e-040
ABA18098 putative ring-box Roc1/Rbx1/Hrt1 protein [Olimarabidopsis pumila]	432	1e-040

Swiss-Prot top hits (Blast detail)	Score	e value
Q940X7 RING-box protein 1a	432	6e-042
P62877 RING-box protein 1	427	2e-041
P62878 RING-box protein 1	427	2e-041
Q8QG64 RING-box protein 1	427	2e-041
Q9W5E1 RING-box protein 1A	424	5e-041

TrEMBL top hits (Blast detail)	Score	e value
A0ELV2 RBX1-like protein	432	9e-041
A5ARK4 Putative uncharacterized protein	432	9e-041
A9NMC5 Putative uncharacterized protein	432	9e-041
A9NSB3 Putative uncharacterized protein	432	9e-041
A9P251 Putative uncharacterized protein	432	9e-041

Arabidopsis top hits (Blast detail)	Score	e value
AT5G20570.1 RBX1 (RING-BOX 1); protein binding	433	4e-043
AT5G20570.3 RBX1 (RING-BOX 1); protein binding	420	1e-041
AT3G42830.1 ring-box protein Roc1/Rbx1/Hrt1, putative	412	1e-040
AT5G20570.2 RBX1 (RING-BOX 1); protein binding	221	2e-018
AT3G05870.1 APC11; protein binding / ubiquitin-protein ligase/ zinc ion binding	128	1e-007

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	2			100%

Unigene Members	Member information