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Information for unigene UN49549
| FASTA Sequence |
| Unigene ID: UN49549 | Length: 1174 |
SSR | | GGGAAAATTAAAAAAATTGTTCTCCGGAAAAGAAGAGAGAGCACTCTTGTGAGAGAGAGAGCAAGCGTCCATTTGAGCAAAGAAAA
AGGCCAAAACTAAAACCAAAACCCATCATTCCTTCTTCTGCTTCTCCATCCTCTCTCTCTCTCATGAGCCTGGTGACCGATTCTAA
ACCGGAATCGGAATCGGACCTCAAACCCAAATCTAAACCGGAACCGGGCGTTGATCAGATGAAGAAGCTTGCGCTGAATCCTGAAG
CTAAAGAGTTCTTTCCTTCTTACAAGAAGAAGAACAATCAGTCTCTGTCTTCTGAAGATTTTGCGACCGCTAAGAAGCTGTCTGGT
GAAGATCTTAAAGCCGACAACAAAAAGGATGGCAATTTCCGGAGGAGCAGAAACAATTATAACCAAGGGAGGAAAGTGAGGATAAC
TGGAAGAGCTTCAAAGGCTCAAAGAGAGGATAGTATTAGAAGAACTGTATATGTCTCTGACATTGATCAGAGTGTGACTGAGGAAG
TCTTAGCTGGTTTGTTCAGCAGCTATGGACAAGTTGTTGATTGTCGTATCTGTGGAGATCCACATTCAGTTCTTCGCTTTGCCTTT
GTTGAGTTCTCTGATGACCATGGTGCAAGGGCTGCTTTAAGTGTAGGTGGAACAATGATCGGTTATTACCCAGTTAGGGTCTTACC
TTAAAACTGCTATTCTTCCTGTGAATCCCACATCTCTCCCCAGGTCAGAAGATGAGAGGGAGATGTGTAGCAGAACCATCTACTGC
ACTAATGTTGACAAGAATGCCACTGAGGATGATGTTAGAACCTTCTTTGAGTCTGCCTGCGGTGAGGTAGCTCGCATAAGGCTTCT
TGGTGACCAGCTGCATTCTACTCGTATAGCTTTTGTTGAATTTGCCATGGCAGAGAGTGCAGTTGGGGCGCTCAACTGCAGTGGAG
TAGTCTTAGGATCGCAGCCGATAAGGGTAAGCCCTTCAAAGACACCAGTGAGACCAAGATTCAGTCGATCACCATCCTCAAACTAG
GAGAGAAACAGAACCAACCCCAAAGAGGCTTTGTTGGTGTTGGAGAGTGATGAAAAACATTTCGTTTTTTTCCTTGAGTAATTTTT
CTTTTCAGTTATCTTTTTTAATTGTTCTCTAATATCTAGAGCAGAGTTATATCTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_175769 CTC-interacting domain 8 protein [Arabidopsis thaliana] | 649 | 2e-065 |
| XP_002894457 predicted protein [Arabidopsis lyrata subsp. lyrata] | 627 | 6e-063 |
| AAF78422 Contains similarity to RNA-binding protein from Arabidopsis thaliana gi|2129727 and contains RNA recognition PF|00076 domain. ESTs gb|H37317, gb|F14415, gb|AA651290 come from this gene | 557 | 8e-055 |
| BAD43546 putative RNA-binding protein [Arabidopsis thaliana] | 525 | 4e-051 |
| NP_001031182 CTC-interacting domain 8 protein [Arabidopsis thaliana] | 525 | 4e-051 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8WXA9 Splicing factor, arginine/serine-rich 12 | 140 | 8e-008 |
| Q8BZX4 Splicing factor, arginine/serine-rich 12 | 140 | 8e-008 |
| Q9JKL7 Splicing factor, arginine/serine-rich 12 | 140 | 8e-008 |
| Q5B630 Polyadenylate-binding protein, cytoplasmic and nuclear | 123 | 7e-006 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9C8M0 At1g53650 | 649 | 1e-065 |
| Q9LPI3 T3F20.1 protein | 557 | 6e-055 |
| Q67ZZ8 Putative RNA-binding protein (Fragment) | 525 | 3e-051 |
| Q9LRR6 Similarity to RNA-binding protein | 494 | 1e-047 |
| B9GGV8 Predicted protein | 462 | 6e-044 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G53650.1 CID8 (CTC-INTERACTING DOMAIN 8); RNA binding / protein binding | 649 | 7e-068 |
| AT3G14450.1 CID9 (CTC-Interacting Domain 9); RNA binding / protein binding | 559 | 2e-057 |
| AT1G53650.2 CID8 (CTC-INTERACTING DOMAIN 8); RNA binding / protein binding | 526 | 1e-053 |
| AT1G32790.1 RNA-binding protein, putative | 456 | 2e-045 |
| AT4G10610.1 CID12; RNA binding | 426 | 5e-042 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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