 |
Information for unigene UN49550
| FASTA Sequence |
| Unigene ID: UN49550 | Length: 731 |
SSR | | ACAGAAGTTATTATAATTACAAATCATAGTTTTTGATTTTTAAATAATAAATCACATTTACATAGATAATAATCGTTCATCCCCAA
ATTTATTAAAACAATTTACAAAAGCAAAAGGAAATACAATGATTTGGGGGAATAAATCAAAGAGATCAGTTAAGTCATCATTTCTT
CAACCAAACACCATCCTTCATCAAATACTTCCACATGATCAACCATCATCATCACCCCCACATCACAAAAACTCATCCTTCCATCA
TCATCATCATCATCATCATCAACATCATCATCAAGAGACCCATCTTCTTCCTTTTCACCATCACCACCACTCTGTATATTCACTAT
TTCCTCTACAACACATCCTGTGTATTCTTCTTCCTCCTCTTCTTCTTCTTCTTCTTCATCAGATTCACAATCATGATCATAGCCAT
AATCATCAGACATAAGATCAAGAAGTCCAGTAGCCGAGAACCCGGAAAGCTTCAAGCCGGGTCTGTGCCCACCAGAAGCAACCTGG
CCACATTTTCCGGTGAACTTGGAGTGATTGGTCGGCTTAGATGACACTTTGGTGAATAGACCGGCGGTTGGACGACAGGTCAAAGG
ATTGACCAACTTGGCTTGCGGTCTTGGATTCAGCGACGGAGGCAGGATCCTGTAGGTTCTAACCATACCGTGTTGCTTGCCTTCAC
GCTTCATCTCAGGAGGTTATTGATGAGACCTTTTACTACACCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002870685 hypothetical protein ARALYDRAFT_493913 [Arabidopsis lyrata subsp. lyrata] | 468 | 7e-045 |
| NP_198885 uncharacterized protein [Arabidopsis thaliana] | 448 | 2e-042 |
| AAM61260 unknown [Arabidopsis thaliana] | 439 | 2e-041 |
| BAF00498 hypothetical protein [Arabidopsis thaliana] | 433 | 9e-041 |
| BAH56975 AT5G40690 [Arabidopsis thaliana] | 311 | 1e-026 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8MP30 Uncharacterized histidine-rich protein DDB_G0274557 | 166 | 4e-011 |
| P04929 Histidine-rich glycoprotein | 147 | 6e-009 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FM29 At5g40690 | 448 | 1e-042 |
| Q8LFQ8 Putative uncharacterized protein | 439 | 1e-041 |
| Q0WQV1 Putative uncharacterized protein At5g40690 | 433 | 6e-041 |
| C0Z2P6 AT5G40690 protein | 311 | 8e-027 |
| B9SLR9 Putative uncharacterized protein | 293 | 1e-024 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G40690.1 INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41730.1); Has 208 Blast hits to 177 proteins in 46 species: Archae - 0; Bacteria - 4; Metazoa - 51; Fungi - 25; Plants - 42; Viruses - 6; Other Eukaryotes - 80 (source: NCBI BLink). | 449 | 5e-045 |
| AT3G10810.1 zinc finger (C3HC4-type RING finger) family protein | 153 | 1e-010 |
| AT4G26600.1 nucleolar protein, putative | 118 | 1e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
