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Information for unigene UN49552

FASTA Sequence
Unigene ID: UN49552Length: 755 SSR 
GGAGAAAAAAAGATTTTCTCTTATTGAATGATCTGTTACAGTAGTGGAAACAAAGAAATACACAGAGAAACACTCTCCAAATGATA
CACTTTCCCTTAGCCTTAGGTACTAACCTCGCTACTTTATACTAGAAACCACAAAACGTCACACACACACATCCTTCTGGTGCGCT
CCGAAAACATAGCAATTGCACCGGATCTCCTACTCAAGTGTTCGGGTTGGTTCGGCGATATTCATTCGGGTCGGTGTTGTACATGA
CTTTCTTGCTTTGGATCCCTCCGGCTGGGGGCTTTATATCACTGTCGGGTTGCGTCTCCCCATTCTTTGAGCTCTCTCCTACTTCT
GGTTTCTTCTTTTCCACACTTGCCGCCGCCGCTTGCTTCTTGCCCCCGAAGATAAGCCTGATGAAGATCGACAAGAATACTACAAC
AATGGAGACGAGGACACCAATGGTTACGTTAGGTTGTTGCTCCGCTTTCTCAATCACTTCCGTGATCTTAGACTTGTACGCACTTA
GGAAAGATATGTCTGCAACCTTGTTCAACAAGTCGAACACAACCTTCTGGTAGCTCTTGAGACCATCTGCAGAAGAGCCGGCAGCT
TCCTCTTCTGCCTTTTGTTTCTCTTTCTCAACGTCAAACTTAGGCTTCCAAGTGGTCTGCCTGTAACTCTCAGCGACCTTCTCGTC
TTTCGCTATCAACATGTTGTCAAACAAGATACCGTCTTGCATCGTCCAGATCTCTATACCTATAGCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
AAK84429 putative papillar cell-specific calnexin [Brassica napus]6481e-065
NP_200987 calnexin 1 [Arabidopsis thaliana]6382e-064
XP_002866454 calnexin 1 [Arabidopsis lyrata subsp. lyrata]6363e-064
XP_002866455 hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp. lyrata]6363e-064
AAK94424 calnexin-like protein 1 [Brassica rapa subsp. pekinensis]5727e-057

Swiss-Prot top hits (Blast detail)Scoree value
P29402 Calnexin homolog 16387e-066
Q38798 Calnexin homolog 25643e-057
Q39817 Calnexin homolog5033e-050
O82709 Calnexin homolog5016e-050
Q39994 Calnexin homolog3295e-030

TrEMBL top hits (Blast detail)Scoree value
Q7XAF7 Putative papillar cell-specific calnexin6487e-066
Q94ER7 Calnexin-like protein 1 (Fragment)5725e-057
Q5NT70 Calnexin5053e-049
B7FLQ0 Putative uncharacterized protein5044e-049
A9PHA6 Predicted protein4848e-047

Arabidopsis top hits (Blast detail)Scoree value
AT5G61790.1 calnexin 1 (CNX1)6387e-067
AT5G07340.1 calnexin, putative5643e-058
AT1G56340.1 CRT1 (CALRETICULIN 1); calcium ion binding / unfolded protein binding1144e-006

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
91  33%
 
101  33%
 
111  33%

Unigene MembersMember information