 |
Information for unigene UN49705
| FASTA Sequence |
| Unigene ID: UN49705 | Length: 813 |
SSR | | GGACTACTAACGTCCCATATCACAATAATTTAGCCAAAATGTCAGAAAACACAACAAAATGGACAATTTAGATTATTGAAAAAAAA
ACATAGCTTCTTAAAAACAAAGACGACCAGAGAGACAACAATAGAAAAGATCAATGACAATATCTTCTTCTGTTCTTCTTTCACCA
TATCATCCTCCTCATAACTTATTGTTGTACCAGAACACACCTTTCTTCTCACCTTGCCTGTCAGGTTCTACATAGATACACTCCTT
CGCCTCCCTCCACATCGCCTTAAACACTGGAGTCCCATCGAACTGGTAGTAATCTCCCAGTATCGGCTTTATCGCCTTGGTAGCTT
CCATCGCGTGGTAATGCGGCATCGTGGAGAACAGGTGATGCGCCACGTGCGTGTCCGTGATATTGTGGAACACCTTGTTCAAGATT
CCGTAGTCTCTATCCACGGTAGCCAAGGCTCCCCTCAACCAATCCCAGATGAGGTAGGAGAATGAGCGAGGGATGGAGCGTTTGAA
ACAGTGCGGTGGGATCGCTTTCTTGAGCTGTCCTACTGTGAAGGGAGGTGTCTCGCAGGGTACGCGTTTGAGGGTATCGGTTTCTG
ACTTCTTTGGAGAAGGAGATACCTGCATTCTTCCACCTGCACCCATATTGTTTTCTTCTTTCAGCTGACGTAGGGGGATAGAGATT
TAACGTTAATAACGATGAACCCTACGAAGAAGCTCCTCCGCAAACTCTCTCTCTACCTTCTCTCTCCTTTCTATCTCTCTCTCTCT
CCTTCTGGTAATGAAACTCTCTCTCTGGTTTCTGGTCCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| CAD30827 fatty acid desaturase 2 [Brassica rapa] | 536 | 1e-052 |
| AAF78778 delta-12 oleate desaturase [Brassica napus] | 536 | 1e-052 |
| ABR27357 fatty acid desaturase 2 [Brassica juncea] | 536 | 1e-052 |
| ACN53522 fatty acid desaturase 2 [Brassica juncea] | 536 | 1e-052 |
| ACP39502 delta-12 oleate desaturase [Brassica napus] | 536 | 1e-052 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q39287 Omega-6 fatty acid desaturase, endoplasmic reticulum | 529 | 4e-053 |
| P46313 Omega-6 fatty acid desaturase, endoplasmic reticulum | 505 | 2e-050 |
| P48631 Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 | 494 | 4e-049 |
| P48630 Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 | 462 | 2e-045 |
| O81931 Delta(12) fatty acid dehydrogenase | 372 | 6e-035 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A6NAF7 Fatty acid desaturase 2 | 536 | 8e-053 |
| C0LEJ5 Fatty acid desaturase 2 | 536 | 8e-053 |
| C3W518 Delta-12 oleate desaturase | 536 | 8e-053 |
| C3W519 Delta-12 oleate desaturase | 536 | 8e-053 |
| C3W520 Delta-12 oleate desaturase | 536 | 8e-053 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G12120.1 FAD2 (FATTY ACID DESATURASE 2); delta12-fatty acid dehydrogenase/ omega-6 fatty acid desaturase | 506 | 2e-051 |
| AT3G12120.2 FAD2 (FATTY ACID DESATURASE 2); delta12-fatty acid dehydrogenase/ omega-6 fatty acid desaturase | 506 | 2e-051 |
| AT3G11170.1 FAD7 (FATTY ACID DESATURASE 7); omega-3 fatty acid desaturase | 208 | 5e-017 |
| AT5G05580.1 FAD8 (FATTY ACID DESATURASE 8); omega-3 fatty acid desaturase | 203 | 2e-016 |
| AT2G29980.1 FAD3 (FATTY ACID DESATURASE 3); omega-3 fatty acid desaturase | 201 | 4e-016 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
