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Information for unigene UN49707

FASTA Sequence
Unigene ID: UN49707Length: 939 SSR 
GGAAACCTTCCCTTTTCAATTCTGCTTCTTCCTGTCAAGCTTAATAGGGTTTCCTCATTCCCAGGCTCCATGACTTCCTGCGATTT
CTCCCCCTCTGCTTGATTCTCTCTCTCTCTCAGATTGAAGAAGAAGGAGAAGAGATGAATGTGAGTCATGCATCGGTGCATCCGGT
GGAAGATCCTCCTCCAGCTACAGCAGCCACACAACAACAAGTAGAGAATAATCATCCGCCACGTGTTAGGATGGATGATATAGAAG
GCATGCCCGGCACTTTACTCGGAGTCGCTCTTCGTTTCTTCCAGTTCTTCTTCGCTGCTGCTTCTCTCTCCGTCATGGCTTCCACT
TCTGATTTCCCTTCCGTCACCGCCTTCTGCTACCTAGTTGCAGCCACTGGACTGCAGAGCTTGTGGAGTCTTGCACTAGCCTCCGT
TGATGTCTATGCCATTATGGTCAAACGTTCGCTTCAGAACCGACGGCTTGTGAGCGTGTTTGCAATTGGTGATGGGGTGACGTCGA
CCCTGACATTTGCAGCGGCTTGTGCGTCGGCAGGCATAACGGTGCTGATAGACAATGATCTGAATAGCTGCTCACAAAACCACTGT
GTTCAGTTTGAAACATCAACAGCATTAGCCTTCATAAGCTGGTTTGCTGCTTTGCCTTCTTTTTTTTTCAACTTCTGGTCTCTCGC
ATCCCGTTGATTGAAAAAAAAAAAAGACAGATACAAGATGATGTTGCTGCTCCACGAGCATGCGTTTCCACGGTGTGTTAAATGTG
TGTGTAAGGGGGTTTTTTCACGGTGTATAGTGACTGCTTTTTCTTCTTATTCGGGTTTGGATCCAACATTCTTCTAAACCCATTAC
CAGGAAATTGGGAATTGTTGTTCGTTTTGTTAAACACTTTGGGATCTATGATTGAAAGGAAAGTTCAGTTCTTGTAGCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_565671 uncharacterized protein [Arabidopsis thaliana]7961e-082
XP_002880929 hypothetical protein ARALYDRAFT_481668 [Arabidopsis lyrata subsp. lyrata]7772e-080
XP_002529944 conserved hypothetical protein [Ricinus communis]7118e-073
ACU16925 unknown [Glycine max]6812e-069
ACU15997 unknown [Glycine max]6652e-067

Swiss-Prot top hits (Blast detail)Scoree value
Q9SKN3 UPF0497 membrane protein At2g283708271e-087
Q6NPF8 UPF0497 membrane protein At2g372005133e-051
Q945M8 UPF0497 membrane protein At3g538503574e-033
Q8L7R5 UPF0497 membrane protein At3g232003557e-033
Q9LZM5 UPF0497 membrane protein At5g020603351e-030

TrEMBL top hits (Blast detail)Scoree value
B9SVC5 Putative uncharacterized protein7115e-073
C6T5C3 Putative uncharacterized protein6812e-069
C6T2V9 Putative uncharacterized protein6651e-067
B9HQ90 Predicted protein6462e-065
B9MZ54 Predicted protein6157e-062

Arabidopsis top hits (Blast detail)Scoree value
AT2G28370.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: integral membrane protein, putative (TAIR:AT2G37200.1); Has 100 Blast hits to 100 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).8289e-089
AT2G37200.1 integral membrane protein, putative5142e-052
AT3G53850.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: integral membrane protein, putative (TAIR:AT5G02060.1); Has 100 Blast hits to 100 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).3574e-034
AT3G23200.1 unknown protein3556e-034
AT5G02060.1 integral membrane protein, putative3351e-031

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
126  100%

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