 |
Information for unigene UN49708
| FASTA Sequence |
| Unigene ID: UN49708 | Length: 1007 |
SSR | | TTTTTTTTCTTCTCCCTAGAATCTGAAGTGGAAGCTTTCTATGTTCAAAGCTTTAGTTTTGTTCTAGCTTCAGTTAAAGTGGAAGA
GAGAGAGAGAGAGTTAAAGGAAACTACTTTGGTTGTTGAAGGGTCTGTATGGGTACCTAGGAGAAGAAGGAACTTTTTGTTGTGGC
AGGAGGCAAGGATCAGATGCATAGTATTAGCTCCAACCCCGCTGGTGACCTTGAGAAGCAGCAGCAGGACAAGACTCCGGAGAAGC
AGAGCGAGTTAGTAAATGAAGCTGCCAAGGAAGTGAACCACCTCACCATTGTTGTCTGCAATGGAGATTCAAGTGGGGCACATGAA
ACCGTAGAATTGGCTCAGAAACTCCAGCTCTCACGAGCAGTGTAGGGTTTGTCAGCAAGAGAAAGAAGAGGCTTTGATAGAACTGG
GGTGCCTATGTCGTGGTGGCCTTGCTAAATCCCATAGGTCATGCATAGATGCTTGGTTTCGCACAAAAGGCTCTAATCAGTGCGAG
ATCTGCCAGGCAGTGGCTGTCAACGTGCCACCTCCAGAGACCCATCCAACTACAAATTACTGGGTTTGGAGGATTGATCCCAGCTA
TAGGCAAGAGCAGCGCGAGAGAGGATGTTTCAATCCTCTATGGGTAGCATTCTCAATTCTGATAGGTGGTCTAATGCTGGATGTGT
TAATATCCATCACACTTGGTGTGTCTGCGCTTCCGGTTAACATAATCATTGGAGTGATAGTGGTGCTAGGGCTAGGAACAGCACTA
AGACTGACATTGGAGTTCTGCTATGAGTGGAGCTTGAGAAGAGCGGTTCAGAGGGCAGTGCAGAGGAGTGAAACAGCCTTTAATAA
CATTGCATATCCACCTGCCTTGTAAGAGATAAATGCCAAAGCTGGAAACATCTTGTGTGTGTTAGTGTGTTATGTAAAAAAGTTGT
GCGAGGAAGACAAAAGTGTGATTGTTTTTACATACAGTACAATGCTGAATTCGTTTGGAGC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002880184 hypothetical protein ARALYDRAFT_483690 [Arabidopsis lyrata subsp. lyrata] | 844 | 3e-088 |
| NP_566045 RING/U-box domain-containing protein [Arabidopsis thaliana] | 838 | 2e-087 |
| AAM64995 unknown [Arabidopsis thaliana] | 838 | 2e-087 |
| XP_002518953 ubiquitin-protein ligase, putative [Ricinus communis] | 706 | 3e-072 |
| XP_002317039 predicted protein [Populus trichocarpa] | 705 | 4e-072 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O64633 At2g45530 | 838 | 1e-087 |
| Q8LB32 Putative uncharacterized protein | 838 | 1e-087 |
| B9RYY4 Ubiquitin-protein ligase, putative | 706 | 2e-072 |
| A9PC07 Predicted protein | 705 | 3e-072 |
| B9GJI5 Predicted protein (Fragment) | 681 | 2e-069 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G45530.1 zinc finger (C3HC4-type RING finger) family protein | 839 | 5e-090 |
| AT2G37950.1 zinc finger (C3HC4-type RING finger) family protein | 152 | 2e-010 |
| AT1G14260.1 zinc finger (C3HC4-type RING finger) family protein | 146 | 1e-009 |
| AT1G14260.2 zinc finger (C3HC4-type RING finger) family protein | 146 | 1e-009 |
| AT5G05830.1 zinc finger (C3HC4-type RING finger) family protein | 146 | 1e-009 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
