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Information for unigene UN49765
| FASTA Sequence |
| Unigene ID: UN49765 | Length: 1432 |
SSR | | GGAGTAACAGAAACTACAATTTATCTAATCCCAACTTGGTTTTACAGCAGAAAAGAAAATTCGACCATAACACAAGTGAAAAATCA
AAAATAATTTCAACATCTCGAAAACGTTCTAAAAACAAACTATTTTTAATTATCACGTCTCGGTTGCCTTTTGCGAGGAGCAGCGG
TTTCTTCCTTCTTCTCCGTCTCATCTTCACTCTTTGAGCTTGAGCTCTCTCCTACTTCTGATTTCTTCTTCTTCTTCTCCACAGTT
GCTGCCGGCGCCGCCTTTTTGCCACCGAAGATAAGCTTGATGAAGAGCGAGAAGAATACTACGACAATGGAGACAAGAACACCAAT
GGTTAGGTTTGGTTGTTCCTCAGCTTTCTCGATCAGCTCGGTGATCTTAGACTTGTAGGCACTTAGGAAAGATATGTCTGCAACCT
TGTTCAAGAGGTCGAACACAATCTTCTGGTAGCTCTTGAGACCACCTGCAGAGCTAGCAGCCTCCTCTTCCGCCTTTTGTTTCTCT
TTCTCAACATCGAACTTCGGCTTCCAAGTAGTCTGTCTGTAAACCTCAGCGACCTTCTCGTTGTTAAACTTCTCCCACTTTTTTCC
ATTAAACGCCTTATAAAACGGGACAATCTTTTCAGGTTCGGTAAGGTTGATAAAAGCATATCCAACATTGCATTTGTTCTTGAAGT
CAATTGGCAAATAAAGGAAATCATATGTTCCTTTACAGTGCTCGTCAATGGCAGATAGAAGCATCTTAGAAGTGTACTTGTTAGGA
ATGTTTTTAACCATCAATGTTGTCCTGTTATCATCCCCACGTAATATACGGTCAACATCAAGCTCATAAAGTTTCTTGTCAGCGTT
ACTAGAGCTAGACTCGCTTCTACGGTGAGAGAGATTCCTGTATCGTTCATTCGGCGAGTCATACGAGCCAGGCATTGAAGCCATTG
GGCTCCTCCCGGGGAAGAGATGAGACAACTGTTGTGGAGGTCTCAGTACAGCATTTGGGGAATTTACATCCATGCGATTCCCAACA
ACATGGGAAAAAGACTTGTGAGAACCGATTTCCATTGGATGTGAGGGTGAAGAGCCAGGAAACCCTATGCTACCATGAGAACCTAT
GTGGAAGCCAGGAGATTCTAGAGACTCAGCTGCATAGGCTTGTCTTCTATCCCAGAAAGGCGAGTTCACTACCGGCGCAGATCCAA
TGTGGTGGTGCACAGGAGAAGATGCCATATTCACCATAATAGGAGGTGCTCTAGGGAATACAGTAACAGGTGGGCGCTGAGTAGGA
ATGCTGTTGATGTGAGATGGCGAGTTAGGCCACATCATGCCATTTGACGGGTTATGTTGCTGAGTATTAGAGTTGCTCCACAAGTT
AGGGTTAGGGCGGCGGGAGCTTTGATTCATGGGAGATCCTACGCCCCCTCCGTTAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAA22374 Mei2-like protein [Arabidopsis thaliana] | 1402 | 1e-152 |
| NP_568946 MEI2-like protein 1 [Arabidopsis thaliana] | 1402 | 1e-152 |
| XP_002871262 predicted protein [Arabidopsis lyrata subsp. lyrata] | 1304 | 3e-141 |
| NP_196346 MEI2-like protein 4 [Arabidopsis thaliana] | 1276 | 5e-138 |
| XP_002280892 PREDICTED: hypothetical protein [Vitis vinifera] | 971 | 1e-102 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P29402 Calnexin homolog 1 | 599 | 6e-061 |
| Q38798 Calnexin homolog 2 | 496 | 5e-049 |
| O82709 Calnexin homolog | 432 | 1e-041 |
| Q39817 Calnexin homolog | 428 | 4e-041 |
| Q39994 Calnexin homolog | 308 | 3e-027 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O23866 Mei2-like protein | 1402 | 8e-153 |
| Q8W4I9 AT5G61960 protein | 1402 | 8e-153 |
| Q9LYN7 Mei2-like protein | 1276 | 3e-138 |
| B9RA66 RNA-binding protein, putative | 951 | 1e-100 |
| B9NFU5 Predicted protein | 834 | 6e-087 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G61960.1 AML1 (ARABIDOPSIS MEI2-LIKE PROTEIN 1); RNA binding / protein binding | 1402 | 4e-155 |
| AT5G61960.2 AML1 (ARABIDOPSIS MEI2-LIKE PROTEIN 1); RNA binding / protein binding | 1402 | 4e-155 |
| AT5G07290.1 AML4 (ARABIDOPSIS MEI2-LIKE 4); RNA binding / nucleic acid binding / nucleotide binding | 1282 | 3e-141 |
| AT5G61790.1 calnexin 1 (CNX1) | 600 | 4e-062 |
| AT5G07340.1 calnexin, putative | 497 | 4e-050 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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