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Information for unigene UN49766
| FASTA Sequence |
| Unigene ID: UN49766 | Length: 891 |
SSR | | GGGAGAGAGAGAGAGAGGAGAAGAAGGAGTTTGGTCGTTCGTCAATGGAGATCTCTGCTTCTCTAACTTTCTCTGGACTCGTTCCT
CGACTTCTCCCTCCCTTGTTCTATCCTCCTCAAGCTCGAACTACTTCCTGTGCACCATTTTCCTCTGCTAAACTCATTTCTCCTCC
TCACAGACGTATACCTCCCTCTCCCTGTCTCGCTGATCAGTCTGCCTCCACCGGGGTCAATGTTGTTGATTCAGATCCCATTGATG
CTGTTAAGAGGAAAGCTATAGACATATCCCCTCAACTCAAAGGAGCTTCAATATTTCTGGTTGGGATTAATAACCACATTAAAACC
AACTTGGGTAAGCTTTTGGCTGAGTCTTTACGATATTACTACTTTGATAGTGATAAGTTGATCGCAGAGGCGGCTGGTGGAAATAC
ATCTGTTCAAGCTTTGAAGGAGGCTGATGAGATGGCTTTTAAGGAATCAGAGACAGAAGTGCTGAAGTAGCTATCTTCTATGGGTC
GGCTTGTAGTTTGCGCTGGAGACGGTGCAGTCCAGAGCTTGACAAATCTTGCACTTCTAAGACACGGGATCTCCATTTGGATCGAT
GTTCCTCTAGAAATCGCAGCTAAAGGAGATGATCCATTCAGCTCGGAACCTTCCCCTGAGTTGTATGAGGCATTAAAAGCAAATTA
CGAAAAATCGAGAAAGGGTTACGATACAGCAGATGCAGTTATTTCCCTTGAGAGAATAGCTACAAAGCTGGGATGGGAAGACTTGG
AAACAGTAACTTCTGAAGAGCTTGCTTTGGAGGCAAGTCTTATGCTTTTTGATTATTACTCCCTCCGTTCCTAAATATAAGATGTT
CTAGTAAAACACGTTTATTAAGAAAATTAGT
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| GenBank top hits (Blast detail) | Score | e value |
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| XP_002877000 shikimate kinase family protein [Arabidopsis lyrata subsp. lyrata] | 943 | 9e-100 |
| NP_189325 shikimate kinase like 1 [Arabidopsis thaliana] | 937 | 5e-099 |
| XP_002328924 shikimate kinase [Populus trichocarpa] | 600 | 5e-060 |
| XP_002512880 protein with unknown function [Ricinus communis] | 574 | 6e-057 |
| ACU20382 unknown [Glycine max] | 533 | 3e-052 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SJ05 Shikimate kinase, chloroplastic | 318 | 1e-028 |
| Q00497 Shikimate kinase, chloroplastic | 271 | 3e-023 |
| B0JFW8 Shikimate kinase | 232 | 1e-018 |
| Q31PU5 Shikimate kinase | 213 | 2e-016 |
| Q5N4D3 Shikimate kinase | 213 | 2e-016 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LW20 AT3G26900 protein | 937 | 3e-099 |
| B9N0W2 Shikimate kinase | 600 | 4e-060 |
| B9RH21 Putative uncharacterized protein | 574 | 4e-057 |
| C6TEY0 Putative uncharacterized protein | 533 | 2e-052 |
| C6T2S3 Putative uncharacterized protein (Fragment) | 413 | 2e-038 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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